Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 6.4e-100 367.5 192 100.0
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.2e-51 205.7 191 63.4
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.8e-49 197.6 190 60.5
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 6.3e-47 191.4 191 56.5
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.2e-47 191.0 191 56.5
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.1e-46 190.7 191 57.1
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.4e-46 190.3 191 56.5
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.4e-46 189.5 191 56.0
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.1e-42 176.4 191 52.9
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 3.6e-42 175.6 191 52.9
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.4e-41 173.7 191 53.9
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.4e-41 173.7 191 51.8
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 5.2e-41 171.8 191 51.3
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 5.2e-41 171.8 188 53.7
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.0e-40 169.9 191 50.3
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 2.0e-40 169.9 191 50.3
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.6e-40 169.5 191 49.7
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 7.4e-40 167.9 188 52.1
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 3.7e-39 165.6 191 49.7
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.1e-38 162.5 191 50.3
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 4.1e-38 162.2 191 50.3
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 9.1e-38 161.0 191 47.6
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.2e-37 160.6 188 49.5
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.0e-37 159.8 191 49.2
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.5e-37 159.1 191 48.7
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 4.5e-37 158.7 191 48.7
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 7.7e-37 157.9 191 49.2
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.0e-36 157.5 191 48.7
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 2.2e-36 156.4 191 48.2
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 2.2e-36 156.4 191 48.2
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.9e-36 156.0 191 46.1
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.9e-36 156.0 188 49.5
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.0e-36 155.2 191 46.6
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 8.5e-36 154.5 191 48.7
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 8.5e-36 154.5 191 46.6
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 8.5e-36 154.5 191 47.6
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.1e-35 154.1 188 47.3
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.1e-35 154.1 188 46.8
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.5e-35 153.7 190 47.4
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.9e-35 153.3 191 46.1
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 2.5e-35 152.9 191 47.6
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.5e-35 152.9 191 47.6
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.2e-35 152.1 188 47.9
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.5e-35 151.8 188 47.9
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 5.5e-35 151.8 188 46.3
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.5e-35 151.8 188 48.9
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 5.5e-35 151.8 190 47.4
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 7.2e-35 151.4 187 46.0
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.2e-35 151.4 187 46.0
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.6e-34 150.2 190 46.3
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.6e-34 150.2 187 46.5
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.1e-34 149.8 189 48.1
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 3.6e-34 149.1 191 48.7
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 3.6e-34 149.1 188 45.7
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 4.7e-34 148.7 187 47.1
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 4.7e-34 148.7 191 46.1
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.7e-34 148.7 190 47.4
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 6.1e-34 148.3 191 44.5
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.4e-33 147.1 187 47.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.4e-33 147.1 187 44.9
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.8e-33 146.7 189 46.6
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.8e-33 146.7 191 46.6
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 2.3e-33 146.4 188 44.7
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 3.0e-33 146.0 186 45.7
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 4.0e-33 145.6 187 45.5
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 6.7e-33 144.8 188 44.1
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 8.8e-33 144.4 189 46.0
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.0e-32 143.3 191 45.5
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 2.6e-32 142.9 191 45.0
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.7e-32 141.7 191 44.5
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 5.7e-32 141.7 191 44.5
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 7.5e-32 141.4 191 44.0
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 7.5e-32 141.4 191 45.0
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 7.5e-32 141.4 159 51.6
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 2.8e-31 139.4 189 48.1
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 4.8e-31 138.7 191 42.9
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 4.8e-31 138.7 181 45.3
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 6.3e-31 138.3 191 42.9
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 6.3e-31 138.3 188 45.7
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 8.2e-31 137.9 191 43.5
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 8.2e-31 137.9 191 46.6
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.4e-30 137.1 191 42.9
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.1e-30 136.0 191 42.9
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 3.1e-30 136.0 191 41.9
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 3.1e-30 136.0 191 41.9
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 3.1e-30 136.0 191 42.9
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.1e-30 136.0 191 45.5
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.1e-30 136.0 191 41.9
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 3.1e-30 136.0 184 45.7
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.1e-30 135.6 191 42.4
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 4.1e-30 135.6 188 45.2
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.3e-30 135.2 191 41.9
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 5.3e-30 135.2 189 47.1
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 7.0e-30 134.8 191 42.4
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 7.0e-30 134.8 189 45.0
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 7.0e-30 134.8 191 41.4
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 7.0e-30 134.8 187 41.7
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 9.1e-30 134.4 191 41.4
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 9.1e-30 134.4 191 41.4
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 9.1e-30 134.4 191 41.4
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.2e-29 134.0 189 46.0
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.2e-29 134.0 191 41.4
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 2.7e-29 132.9 191 44.0
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.5e-29 132.5 187 43.3
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 4.5e-29 132.1 189 44.4
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.5e-29 132.1 191 45.5
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.5e-29 132.1 191 40.8
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 5.9e-29 131.7 189 43.4
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 5.9e-29 131.7 189 45.5
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 7.7e-29 131.3 189 44.4
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.7e-28 130.2 189 46.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.2e-28 129.8 174 43.7
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 3.8e-28 129.0 182 45.1
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 3.8e-28 129.0 191 45.0
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 6.5e-28 128.3 191 40.3
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 3.2e-27 125.9 190 39.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 5.5e-27 125.2 191 43.5
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.2e-26 124.0 187 41.7
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 2.0e-24 116.7 82 75.6
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 7.5e-24 114.8 190 36.3
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.3e-23 114.0 171 46.8
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.8e-23 112.8 190 34.2
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.3e-23 111.7 188 39.4
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 6.3e-23 111.7 170 42.4
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 8.3e-23 111.3 170 42.9
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 3.1e-22 109.4 191 38.2
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 2.0e-21 106.7 188 38.3
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 2.7e-21 106.3 82 68.3
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.0e-20 102.1 92 62.0
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 6.6e-20 101.7 186 38.7
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.5e-19 100.5 81 63.0
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 3.3e-19 99.4 188 36.7
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.3e-19 99.4 82 62.2
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 7.2e-19 98.2 188 36.2
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.8e-18 96.3 190 35.8
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 2.8e-15 86.3 189 32.3
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 6.3e-15 85.1 99 51.5
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-14 84.3 56 71.4
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.1e-14 82.8 67 64.2
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 7.0e-14 81.6 59 69.5
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.5e-13 79.0 48 75.0
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.8e-13 78.2 177 33.3
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.0e-12 77.8 81 53.1
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 2.3e-12 76.6 54 66.7
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 2.3e-12 76.6 54 66.7
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 2.9e-12 76.3 52 69.2
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 3.8e-12 75.9 186 31.2
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 5.0e-12 75.5 53 66.0
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 6.6e-12 75.1 52 71.2
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 4.3e-11 72.4 54 70.4
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 5.6e-11 72.0 191 29.3
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 7.3e-11 71.6 187 27.3
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 3.6e-10 69.3 62 61.3
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.4e-09 67.4 53 67.9
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.3e-09 66.6 85 41.2
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.3e-09 66.6 85 41.2
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 5.2e-09 65.5 164 28.0
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 6.8e-09 65.1 72 47.2
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.0e-08 63.5 191 26.2
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.5e-08 61.6 48 58.3
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.2e-07 60.1 48 66.7
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.4e-06 55.5 79 44.3


User provided reference genes

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