Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 4.4e-43 177.6 90 100.0
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.2e-34 148.7 89 87.6
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.4e-27 124.8 96 74.0
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.4e-26 120.6 96 69.8
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.8e-20 102.4 85 65.9
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.5e-19 99.4 77 66.2
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.0e-19 99.0 83 66.3
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 7.6e-19 97.1 82 65.9
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 9.9e-19 96.7 88 60.2
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.4e-17 92.0 90 58.9
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.2e-16 89.7 81 59.3
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.2e-16 89.7 81 59.3
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 3.5e-16 88.2 87 54.0
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.3e-15 85.5 81 56.8
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 3.0e-15 85.1 87 52.9
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 6.6e-15 84.0 84 58.3
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.1e-14 83.2 79 58.2
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 2.5e-14 82.0 81 55.6
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 2.5e-14 82.0 87 51.7
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.6e-14 80.9 81 54.3
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.6e-14 80.9 81 54.3
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 7.3e-14 80.5 81 51.9
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 7.3e-14 80.5 81 53.1
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 7.3e-14 80.5 81 53.1
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 9.6e-14 80.1 81 54.3
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.2e-13 79.7 81 51.9
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.2e-13 79.7 86 48.8
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.2e-13 79.7 80 52.5
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.1e-13 79.0 81 50.6
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 2.1e-13 79.0 79 50.6
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 2.8e-13 78.6 87 47.1
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.6e-13 78.2 81 54.3
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 3.6e-13 78.2 89 47.2
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 3.6e-13 78.2 83 50.6
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 3.6e-13 78.2 84 51.2
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 4.7e-13 77.8 80 48.8
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 8.1e-13 77.0 83 49.4
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 8.1e-13 77.0 83 49.4
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 8.1e-13 77.0 79 54.4
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.1e-12 76.6 81 51.9
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.8e-12 75.9 83 48.2
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.8e-12 75.9 80 47.5
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.4e-12 75.5 79 49.4
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.4e-12 75.5 82 47.6
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 3.1e-12 75.1 90 50.0
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.1e-12 75.1 83 48.2
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 3.1e-12 75.1 80 50.0
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 4.0e-12 74.7 87 46.0
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 4.0e-12 74.7 80 48.8
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 4.0e-12 74.7 81 50.6
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 5.3e-12 74.3 80 50.0
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 5.3e-12 74.3 82 47.6
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 5.3e-12 74.3 80 48.8
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 5.3e-12 74.3 84 51.2
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.9e-12 73.9 80 48.8
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 6.9e-12 73.9 80 48.8
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 6.9e-12 73.9 79 51.9
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.2e-11 73.2 81 48.1
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.2e-11 73.2 79 51.9
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.2e-11 73.2 76 51.3
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.2e-11 73.2 89 44.9
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.5e-11 72.8 89 44.9
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.0e-11 72.4 80 46.2
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.0e-11 72.4 80 47.5
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.6e-11 72.0 88 42.0
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 3.4e-11 71.6 89 43.8
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 3.4e-11 71.6 89 43.8
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 3.4e-11 71.6 80 46.2
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 5.8e-11 70.9 86 41.9
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 5.8e-11 70.9 81 49.4
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 5.8e-11 70.9 81 49.4
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 5.8e-11 70.9 81 49.4
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 5.8e-11 70.9 82 45.1
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 5.8e-11 70.9 81 49.4
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 7.6e-11 70.5 89 50.6
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 7.6e-11 70.5 83 45.8
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 7.6e-11 70.5 88 46.6
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 9.9e-11 70.1 78 48.7
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 9.9e-11 70.1 89 42.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 9.9e-11 70.1 89 42.7
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 9.9e-11 70.1 82 42.7
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 9.9e-11 70.1 80 46.2
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 9.9e-11 70.1 80 46.2
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.3e-10 69.7 83 42.2
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.3e-10 69.7 80 45.0
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 1.7e-10 69.3 81 48.1
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.7e-10 69.3 83 42.2
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.2e-10 68.9 88 40.9
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 2.2e-10 68.9 88 45.5
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 2.2e-10 68.9 81 44.4
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 2.2e-10 68.9 81 48.1
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.9e-10 68.6 82 42.7
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 2.9e-10 68.6 85 43.5
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.8e-10 68.2 82 40.2
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 4.9e-10 67.8 81 46.9
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 6.4e-10 67.4 79 50.6
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.4e-10 67.4 79 46.8
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 8.4e-10 67.0 81 43.2
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.1e-09 66.6 87 41.4
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.4e-09 66.2 82 41.5
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.4e-09 66.2 80 41.2
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.9e-09 65.9 76 48.7
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 3.2e-09 65.1 77 44.2
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 3.2e-09 65.1 81 43.2
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 4.2e-09 64.7 81 42.0
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 4.2e-09 64.7 82 45.1
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 4.2e-09 64.7 79 45.6
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 7.1e-09 63.9 80 47.5
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 9.3e-09 63.5 82 42.7
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.2e-08 63.2 81 45.7
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.6e-08 62.8 77 41.6
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.6e-08 62.8 79 43.0
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.6e-08 62.8 88 43.2
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 2.1e-08 62.4 81 46.9
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 6.0e-08 60.8 79 40.5
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 6.0e-08 60.8 81 44.4
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 7.8e-08 60.5 81 38.3
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 7.8e-08 60.5 81 43.2
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-07 59.7 62 58.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.7e-07 59.3 79 39.2
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.0e-07 58.5 87 37.9
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 1.1e-06 56.6 79 38.0
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 1.5e-06 56.2 81 45.7
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 2.5e-06 55.5 77 39.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.5e-06 55.5 79 38.0
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.3e-06 54.7 80 41.2
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.3e-06 54.7 80 38.8
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 5.6e-06 54.3 71 40.8
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 5.6e-06 54.3 71 40.8
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 5.6e-06 54.3 66 43.9


User provided reference genes

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