Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g040060.1 Solanum lycopersicum HOM05D004492 ORTHO05D005602 5.7e-55 217.2 102 100.0
Sopen06g020530 Solanum pennellii HOM05D004492 ORTHO05D005602 1.4e-50 202.6 98 95.9
Solyc06g060390.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 1.0e-48 196.4 98 92.9
PGSC0003DMG400017559 Solanum tuberosum HOM05D004492 ORTHO05D005602 1.8e-48 195.7 98 91.8
Solyc01g034050.1 Solanum lycopersicum HOM05D004492 ORTHO05D005602 2.0e-47 192.2 101 91.1
CAN.G1396.8 Capsicum annuum HOM05D004492 ORTHO05D005602 2.9e-43 178.3 98 84.7
Nitab4.5_0000633g0160 Nicotiana tabacum HOM05D004492 ORTHO05D005602 1.6e-41 172.6 98 81.6
Nitab4.5_0004882g0030 Nicotiana tabacum HOM05D004492 ORTHO05D005602 1.0e-40 169.9 98 79.6
Peaxi162Scf00051g00731 Petunia axillaris HOM05D004492 ORTHO05D005602 1.8e-40 169.1 98 80.6
Solyc08g016560.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 4.5e-36 154.5 74 97.3
CSS0028158 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 1.5e-34 149.4 96 72.9
CSS0038302 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 1.5e-34 149.4 96 72.9
MSTRG.25402 Avicennia marina HOM05D004492 ORTHO05D005602 1.6e-33 146.0 98 70.4
Oeu047923.1 Olea europaea HOM05D004492 ORTHO05D005602 3.6e-33 144.8 93 68.8
Ciclev10001105m.g Citrus clementina HOM05D004492 ORTHO05D005602 4.7e-33 144.4 96 70.8
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 4.7e-33 144.4 99 67.7
Dinv27371 Davidia involucrata HOM05D004492 ORTHO05D005602 1.4e-32 142.9 96 67.7
SalBow7G0677 Salvia bowleyana HOM05D004492 ORTHO05D005602 4.0e-32 141.4 106 64.2
Actinidia29442 Actinidia chinensis HOM05D004492 ORTHO05D005602 5.2e-32 141.0 90 73.3
Migut.C01175 Erythranthe guttata HOM05D004492 ORTHO05D005602 5.2e-32 141.0 98 64.3
THA.LOC104813139 Tarenaya hassleriana HOM05D004492 ORTHO05D005602 8.8e-32 140.2 93 67.7
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 1.5e-31 139.4 99 67.7
Atru.chr13.1338 Acer truncatum HOM05D004492 ORTHO05D005602 2.0e-31 139.0 95 68.4
Atru.chr13.1381 Acer truncatum HOM05D004492 ORTHO05D005602 2.0e-31 139.0 95 68.4
CANSAT11G0049 Cannabis sativa HOM05D004492 ORTHO05D005602 2.0e-31 139.0 88 71.6
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 2.0e-31 139.0 96 65.6
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 2.0e-31 139.0 90 72.2
Sabra05G0130600 Salix brachista HOM05D004492 ORTHO05D005602 2.0e-31 139.0 101 64.4
GSVIVG01008928001 Vitis vinifera HOM05D004492 ORTHO05D005602 3.4e-31 138.3 92 69.6
Manes.18G073743 Manihot esculenta HOM05D004492 ORTHO05D005602 4.4e-31 137.9 98 62.2
SalBow7G1607 Salvia bowleyana HOM05D004492 ORTHO05D005602 5.7e-31 137.5 104 63.5
arahy.Tifrunner.gnm1.ann1.WF7TJ5 Arachis hypogaea HOM05D004492 ORTHO05D005602 7.5e-31 137.1 93 68.8
Prupe.1G503800 Prunus persica HOM05D004492 ORTHO05D005602 1.7e-30 136.0 94 66.0
Sc23g0000850 Simmondsia chinensis HOM05D004492 ORTHO05D005602 2.8e-30 135.2 96 65.6
Aqoxy5G02431 Aquilegia oxysepala HOM05D004492 ORTHO05D005602 3.7e-30 134.8 99 61.6
DCAR_002659 Daucus carota HOM05D004492 ORTHO05D005602 4.8e-30 134.4 96 62.5
Thecc.08G118700 Theobroma cacao HOM05D004492 ORTHO05D005602 4.8e-30 134.4 95 64.2
Gohir.A02G074300 Gossypium hirsutum HOM05D004492 ORTHO05D005602 8.3e-30 133.7 91 65.9
Gorai.005G091200 Gossypium raimondii HOM05D004492 ORTHO05D005602 8.3e-30 133.7 88 67.0
Cpa.g.sc36.10 Carica papaya HOM05D004492 ORTHO05D005602 1.1e-29 133.3 90 63.3
ECA246G3183 Erigeron canadensis HOM05D004492 ORTHO05D005602 1.1e-29 133.3 98 61.2
TAR625G1407 Trochodendron aralioides HOM05D004492 ORTHO05D005602 1.1e-29 133.3 99 59.6
Lj1g0007587 Lotus japonicus HOM05D004492 ORTHO05D005602 1.4e-29 132.9 95 63.2
CiPaw.06G026300 Carya illinoinensis HOM05D004492 ORTHO05D005602 1.8e-29 132.5 96 62.5
MD15G1356600 Malus domestica HOM05D004492 ORTHO05D005602 3.1e-29 131.7 92 66.3
EL10Ac1g00021 Beta vulgaris HOM05D004492 ORTHO05D005602 4.1e-29 131.3 95 64.2
Phvul.009G121500 Phaseolus vulgaris HOM05D004492 ORTHO05D005602 5.4e-29 131.0 98 64.3
Lalb_Chr08g0241631 Lupinus albus HOM05D004492 ORTHO05D005602 7.0e-29 130.6 93 63.4
Migut.C01177 Erythranthe guttata HOM05D004492 ORTHO05D005602 9.1e-29 130.2 97 60.8
RcHm_v2.0_Chr6g0294891 Rosa chinensis HOM05D004492 ORTHO05D005602 2.0e-28 129.0 89 67.4
AUR62004708 Chenopodium quinoa HOM05D004492 ORTHO05D005602 2.7e-28 128.6 98 61.2
HanXRQChr05g0149221 Helianthus annuus HOM05D004492 ORTHO05D005602 3.5e-28 128.3 96 62.5
Lsat_1_v5_gn_6_109160 Lactuca sativa HOM05D004492 ORTHO05D005602 3.5e-28 128.3 93 62.4
Potri.005G173100 Populus trichocarpa HOM05D004492 ORTHO05D005602 5.9e-28 127.5 88 69.3
AUR62030552 Chenopodium quinoa HOM05D004492 ORTHO05D005602 7.7e-28 127.1 99 59.6
Cc10_g10520 Coffea canephora HOM05D004492 ORTHO05D005602 7.7e-28 127.1 86 68.6
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 7.7e-28 127.1 88 63.6
Sed0009263 Sechium edule HOM05D004492 ORTHO05D005602 7.7e-28 127.1 93 63.4
Hund27046 Selenicereus undatus HOM05D004492 ORTHO05D005602 7.7e-28 127.1 96 60.4
VMungo1309G2182 Vigna mungo HOM05D004492 ORTHO05D005602 7.7e-28 127.1 90 65.6
Ca_15216_v3 Cicer arietinum L. HOM05D004492 ORTHO05D005602 1.0e-27 126.7 90 65.6
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 1.0e-27 126.7 93 62.4
Duzib093G1652 Durio zibethinus HOM05D004492 ORTHO05D005602 1.0e-27 126.7 97 59.8
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 1.0e-27 126.7 96 60.4
ClCG03G009360 Citrullus lanatus HOM05D004492 ORTHO05D005602 2.3e-27 125.6 93 61.3
MELO3C003048.2 Cucumis melo HOM05D004492 ORTHO05D005602 2.3e-27 125.6 93 61.3
Ah.05g172340 Amaranthus hybridus HOM05D004492 ORTHO05D005602 3.8e-27 124.8 98 59.2
TPR.G22341 Trifolium pratense HOM05D004492 ORTHO05D005602 3.8e-27 124.8 90 64.4
Migut.C01176 Erythranthe guttata HOM05D004492 ORTHO05D005602 8.6e-27 123.6 95 60.0
Psat5g133640 Pisum sativum HOM05D004492 ORTHO05D005602 8.6e-27 123.6 90 62.2
TWI12G1231 Tripterygium wilfordii HOM05D004492 ORTHO05D005602 1.1e-26 123.2 96 61.5
Gohir.D02G081500 Gossypium hirsutum HOM05D004492 ORTHO05D005602 2.5e-26 122.1 88 63.6
Medtr3g073000 Medicago truncatula HOM05D004492 ORTHO05D005602 3.3e-26 121.7 90 62.2
FvH4_2g26280 Fragaria vesca HOM05D004492 ORTHO05D005602 7.2e-26 120.6 88 63.6
AL3G50940 Arabidopsis lyrata HOM05D004492 ORTHO05D005602 1.2e-25 119.8 92 57.6
Hma1.2p1_0038F.1_g023980 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 1.6e-25 119.4 94 64.9
Sp3g31340 Schrenkiella parvula HOM05D004492 ORTHO05D005602 1.6e-25 119.4 92 56.5
AT2G17900 Arabidopsis thaliana HOM05D004492 ORTHO05D005602 2.1e-25 119.0 92 57.6
Thhalv10022664m.g Eutrema salsugineum HOM05D004492 ORTHO05D005602 2.1e-25 119.0 92 57.6
FAN24G0496 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.1e-25 119.0 88 62.5
unitig_46.g18495 Utricularia gibba HOM05D004492 ORTHO05D005602 2.1e-25 119.0 98 56.1
RcHm_v2.0_Chr6g0294881 Rosa chinensis HOM05D004492 ORTHO05D005602 3.6e-25 118.2 91 59.3
Aa31LG9G14390 Aethionema arabicum HOM05D004492 ORTHO05D005602 6.1e-25 117.5 90 55.6
Carub.0003s3205 Capsella rubella HOM05D004492 ORTHO05D005602 1.0e-24 116.7 89 58.4
A07p03030 Brassica napus HOM05D004492 ORTHO05D005602 2.3e-24 115.5 89 56.2
BraA07t28100Z Brassica rapa HOM05D004492 ORTHO05D005602 2.3e-24 115.5 89 56.2
FAN27G1826 Fragaria x ananassa HOM05D004492 ORTHO05D005602 3.0e-24 115.2 89 59.6
BcaB03g16570 Brassica carinata HOM05D004492 ORTHO05D005602 5.2e-24 114.4 94 52.1
PSO170G3797 Papaver somniferum HOM05D004492 ORTHO05D005602 5.2e-24 114.4 98 56.1
C07p05160 Brassica napus HOM05D004492 ORTHO05D005602 6.8e-24 114.0 92 54.3
BolC7t40914H Brassica oleracea HOM05D004492 ORTHO05D005602 6.8e-24 114.0 92 54.3
BcaC06g36340 Brassica carinata HOM05D004492 ORTHO05D005602 1.2e-23 113.2 92 54.3
FAN15G1155 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.6e-23 112.1 89 57.3
ATR0684G004 Amborella trichopoda HOM05D004492 ORTHO05D005602 9.8e-23 110.2 99 48.5
CDE11G0913 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 9.2e-21 103.6 96 49.0
Hma1.2p1_0038F.1_g023990 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 5.9e-20 100.9 67 70.1
Lj7C323T6 Lonicera japonica HOM05D004492 ORTHO05D005602 3.8e-19 98.2 57 77.2
SGA_v2.0_scaffold52G19008 Striga asiatica HOM05D004492 ORTHO05D005602 6.6e-19 97.4 70 62.9
arahy.Tifrunner.gnm1.ann1.Y35QAD Arachis hypogaea HOM05D004492 ORTHO05D005602 3.3e-18 95.1 67 65.7
Zm00001eb216690 Zea mays HOM05D004492 ORTHO05D005602 1.6e-17 92.8 94 51.1
COL.COLO4_38233 Corchorus olitorius HOM05D004492 ORTHO05D005602 3.6e-17 91.7 88 52.3
Zm00001eb393760 Zea mays HOM05D004492 ORTHO05D005602 6.1e-17 90.9 94 50.0
Glyma.04G252800 Glycine max HOM05D004492 ORTHO05D005602 4.0e-16 88.2 53 73.6
Zm00001eb002880 Zea mays HOM05D004492 ORTHO05D005602 6.8e-16 87.4 97 50.5
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 1.2e-15 86.7 98 37.8
FvH4_2g26270 Fragaria vesca HOM05D004492 ORTHO05D005602 9.8e-15 83.6 62 62.9
Lj7A312G16 Lonicera japonica HOM05D004492 ORTHO05D005602 1.3e-14 83.2 51 74.5
HPP92_009359 Vanilla planifolia HOM05D004492 ORTHO05D005602 3.7e-14 81.6 95 42.1
Pp3c19_7630 Physcomitrium patens HOM05D004492 ORTHO05D005602 6.4e-14 80.9 100 35.0
FAN15G0234 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.8e-13 79.3 83 45.8
FvH4_2g03781 Fragaria vesca HOM05D004492 ORTHO05D005602 6.2e-09 64.3 57 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 1.1e-08 63.5 96 30.2
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 2.2e-06 55.8 91 34.1
FAN24G3351 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.9e-06 55.5 47 53.2


User provided reference genes

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