Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 2162.9 1117 100.0
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 2097.8 1118 97.6
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1936.0 1118 89.9
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1752.3 1386 70.8
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1730.7 1070 85.1
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1718.7 915 97.3
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1649.8 1122 78.4
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1491.5 1135 67.2
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1468.8 1143 67.0
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1468.4 1125 67.1
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1458.4 1143 66.1
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1451.8 1139 65.8
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1451.8 1158 65.5
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1449.9 1137 65.4
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1448.7 1135 66.3
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1441.0 1135 65.7
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1424.1 1134 65.4
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1416.4 1140 64.2
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1415.6 1131 63.7
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1412.5 1206 62.6
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1404.8 1018 68.8
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1404.8 1122 64.5
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1399.4 1139 63.4
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1396.7 1132 63.9
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1396.3 1126 64.4
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1395.2 1144 63.8
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1395.2 1246 60.1
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1394.4 1133 63.3
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1393.6 1140 63.6
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1392.9 1147 63.6
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1387.9 1132 63.9
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1386.7 1137 63.7
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1385.9 1131 63.2
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1385.9 1132 64.0
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1378.6 1131 62.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1378.2 1137 63.3
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1370.9 1127 63.1
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1368.6 1114 63.2
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1368.6 1115 63.4
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1365.9 1129 63.1
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1362.1 1131 63.2
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1352.8 1138 62.7
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1351.7 1138 62.7
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1335.5 1150 60.7
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1333.5 1139 61.7
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1333.2 1129 62.2
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1330.9 1128 62.1
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1328.5 1132 60.9
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1325.8 1116 61.8
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1322.4 1125 62.2
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1321.2 1117 61.2
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1318.9 1080 63.0
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1312.4 1123 61.8
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1311.6 1130 60.4
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1310.0 1132 60.3
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1309.3 1130 60.5
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1309.3 1118 62.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1308.9 1019 65.6
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1308.9 1124 61.3
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1303.1 1177 58.9
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1302.7 1129 59.9
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1296.6 1115 61.4
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1296.2 1082 61.5
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1290.8 1116 61.4
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1288.1 1122 61.0
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1287.7 1122 61.1
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1278.1 1096 59.6
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1275.4 1117 59.8
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1274.2 1047 61.6
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1274.2 1096 59.7
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1273.8 1070 60.3
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1273.8 1126 59.1
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1273.5 1047 61.4
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1270.8 1117 59.0
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1270.8 1031 62.9
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1267.7 1140 58.2
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1266.5 1095 59.9
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1265.8 1115 58.7
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1265.4 1082 60.3
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1262.7 1116 59.8
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1261.5 1120 60.4
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1261.1 1090 59.4
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1260.0 1093 59.1
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1253.0 1124 59.4
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1251.9 1083 59.1
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1251.9 1103 58.6
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1250.3 1082 59.1
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1249.2 1131 59.4
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1248.0 1134 58.8
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1245.0 1144 59.4
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1243.4 1105 59.3
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1232.6 1109 58.1
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1209.9 1138 57.8
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1187.2 1054 57.8
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1176.4 908 65.3
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1169.1 1090 56.5
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1158.7 1055 57.8
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1147.1 991 58.4
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1128.6 1091 54.0
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1122.1 1122 53.8
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1102.4 1049 53.8
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.4e-308 1063.1 1080 53.2
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.3e-306 1056.6 1087 54.3
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 6.6e-306 1054.3 907 61.6
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 4.9e-301 1038.1 818 65.0
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-296 1022.7 677 73.6
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.2e-293 1012.7 969 54.6
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 4.0e-287 991.9 1136 49.6
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 6.7e-282 974.5 1094 48.5
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 4.3e-265 918.7 783 61.6
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 9.0e-263 911.0 1061 46.7
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.4e-258 897.1 976 47.5
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 1.5e-241 840.5 1017 45.9
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 6.3e-224 781.9 651 62.4
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.3e-216 755.0 547 70.2
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.3e-216 755.0 547 70.2
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.0e-211 738.4 588 64.6
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 7.3e-196 688.7 1063 38.7
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 6.5e-152 542.7 395 70.1
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 9.5e-103 379.4 206 95.1
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 3.4e-92 344.4 397 49.1
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 1.2e-60 239.6 201 60.7
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 5.8e-60 237.3 599 27.9
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.0e-56 226.5 143 74.1
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.1e-56 224.2 176 72.7
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 8.7e-48 196.8 165 59.4
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 7.6e-44 183.7 171 59.1
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.0e-43 183.3 202 49.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.9e-39 169.1 104 83.7
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.8e-38 164.5 121 72.7
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.8e-37 162.5 173 52.6
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 4.5e-36 157.9 368 31.0
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.0e-32 146.7 628 23.2
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 4.3e-31 141.4 151 51.0
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 2.6e-23 115.5 84 72.6
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 5.9e-20 104.4 94 52.1
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 7.2e-18 97.4 77 76.6
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 6.1e-17 94.4 244 27.9
Solyc05g023600.3 Solanum lycopersicum HOM05D004682 ORTHO05D006197 3.0e-16 92.0 136 44.1
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.8e-16 90.5 77 70.1
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 2.2e-14 85.9 82 51.2
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 2.8e-14 85.5 303 27.4
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 2.8e-14 85.5 127 46.5
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 4.1e-13 81.6 87 57.5
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 2.6e-12 79.0 39 92.3
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.8e-11 75.1 68 54.4
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 1.2e-09 70.1 50 70.0
Solyc03g150123.1 Solanum lycopersicum HOM05D004682 ORTHO05D026176 2.7e-09 68.9 58 62.1
Solyc09g037050.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 4.7e-09 68.2 58 62.1
Sopen11g012770 Solanum pennellii HOM05D056827 ORTHO05D026186 1.4e-08 66.6 107 45.8
Sopen07g009810 Solanum pennellii HOM05D004682 ORTHO05D026186 2.0e-07 62.8 62 61.3
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 2.0e-07 62.8 71 47.9
PGSC0003DMG400005431 Solanum tuberosum HOM05D017937 ORTHO05D026186 3.3e-07 62.0 81 48.1


User provided reference genes

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