Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g025950.1 Solanum lycopersicum HOM05D000573 ORTHO05D000425 1.6e-21 105.1 52 100.0
Hund13397 Selenicereus undatus HOM05D000573 ORTHO05D000425 8.8e-12 72.8 53 64.2
TWI32G0622 Tripterygium wilfordii HOM05D000573 ORTHO05D000425 9.8e-11 69.3 53 62.3
Sc08g0008270 Simmondsia chinensis HOM05D000573 ORTHO05D000425 5.4e-09 63.5 65 49.2
Solyc03g032220.3 Solanum lycopersicum HOM05D000573 ORTHO05D000425 5.4e-09 63.5 97 41.2
Solyc05g026330.3 Solanum lycopersicum HOM05D000573 ORTHO05D000425 5.4e-09 63.5 99 41.4
Gohir.D04G182200 Gossypium hirsutum HOM05D000573 ORTHO05D000425 1.6e-08 62.0 52 59.6
CAN.G354.31 Capsicum annuum HOM05D000573 ORTHO05D000425 2.7e-08 61.2 97 39.2
Solyc05g041620.3 Solanum lycopersicum HOM05D000573 ORTHO05D000425 3.5e-08 60.8 100 42.0
CiPaw.04G152500 Carya illinoinensis HOM05D000573 ORTHO05D000425 4.5e-08 60.5 97 37.1
Sopen05g025750 Solanum pennellii HOM05D000573 ORTHO05D000425 4.5e-08 60.5 99 41.4
Prupe.7G214400 Prunus persica HOM05D000573 ORTHO05D000425 5.9e-08 60.1 98 37.8
Sopen05g022660 Solanum pennellii HOM05D000573 ORTHO05D000425 5.9e-08 60.1 85 45.9
CSS0041417 Camellia sinensis var. sinensis HOM05D000573 ORTHO05D000425 1.0e-07 59.3 97 38.1
CAN.G354.25 Capsicum annuum HOM05D000573 ORTHO05D000425 1.0e-07 59.3 96 38.5
CiPaw.04G152700 Carya illinoinensis HOM05D000573 ORTHO05D000425 1.0e-07 59.3 88 39.8
Eucgr.C03684 Eucalyptus grandis HOM05D000573 ORTHO05D000425 1.0e-07 59.3 78 42.3
QL02p063408 Quercus lobata HOM05D000573 ORTHO05D000425 1.3e-07 58.9 97 36.1
Cfa003129 Carpinus fangiana HOM05D000573 ORTHO05D000425 1.7e-07 58.5 97 37.1
Haze_25875 Corylus avellana HOM05D000573 ORTHO05D000425 1.7e-07 58.5 97 37.1
Eucgr.C00924 Eucalyptus grandis HOM05D000573 ORTHO05D000425 1.7e-07 58.5 97 38.1
Eucgr.C00925 Eucalyptus grandis HOM05D000573 ORTHO05D000425 1.7e-07 58.5 97 39.2
QL02p063401 Quercus lobata HOM05D000573 ORTHO05D000425 1.7e-07 58.5 97 37.1
QL02p063419 Quercus lobata HOM05D000573 ORTHO05D000425 1.7e-07 58.5 97 39.2
DCAR_012004 Daucus carota HOM05D000573 ORTHO05D000425 2.2e-07 58.2 97 37.1
Ciclev10009342m.g Citrus clementina HOM05D000573 ORTHO05D000425 2.9e-07 57.8 97 37.1
HanXRQChr09g0238231 Helianthus annuus HOM05D000573 ORTHO05D000425 2.9e-07 57.8 97 36.1
QL02p063363 Quercus lobata HOM05D000573 ORTHO05D000425 2.9e-07 57.8 97 39.2
QL02p063382 Quercus lobata HOM05D000573 ORTHO05D000425 2.9e-07 57.8 97 39.2
Dinv42290 Davidia involucrata HOM05D000573 ORTHO05D000425 3.8e-07 57.4 97 37.1
Duzib251G0446 Durio zibethinus HOM05D000573 ORTHO05D000425 3.8e-07 57.4 52 55.8
HanXRQChr09g0238211 Helianthus annuus HOM05D000573 ORTHO05D000425 3.8e-07 57.4 97 36.1
Lj4C315T1 Lonicera japonica HOM05D000573 ORTHO05D000425 3.8e-07 57.4 97 36.1
RcHm_v2.0_Chr2g0092721 Rosa chinensis HOM05D000573 ORTHO05D000425 3.8e-07 57.4 53 54.7
Cfa003125 Carpinus fangiana HOM05D000573 ORTHO05D000425 5.0e-07 57.0 96 36.5
Rhsim05G0032100 Rhododendron simsii HOM05D000573 ORTHO05D000425 5.0e-07 57.0 97 37.1
THA.LOC104811735 Tarenaya hassleriana HOM05D000573 ORTHO05D000425 5.0e-07 57.0 97 38.1
MSTRG.10582 Avicennia marina HOM05D000573 ORTHO05D000425 6.5e-07 56.6 97 37.1
Nitab4.5_0008668g0010 Nicotiana tabacum HOM05D000573 ORTHO05D000425 6.5e-07 56.6 33 72.7
QL02p063425 Quercus lobata HOM05D000573 ORTHO05D000425 6.5e-07 56.6 97 37.1
TWI38G1688 Tripterygium wilfordii HOM05D000573 ORTHO05D000425 6.5e-07 56.6 96 35.4
CSS0043057 Camellia sinensis var. sinensis HOM05D000573 ORTHO05D000425 8.5e-07 56.2 97 36.1
Dinv36736 Davidia involucrata HOM05D000573 ORTHO05D000425 8.5e-07 56.2 96 37.5
Dinv36738 Davidia involucrata HOM05D000573 ORTHO05D000425 8.5e-07 56.2 96 37.5
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 8.5e-07 56.2 98 36.7
PGR142G0522 Punica granatum HOM05D000573 ORTHO05D000425 8.5e-07 56.2 97 36.1
RcHm_v2.0_Chr2g0092631 Rosa chinensis HOM05D000573 ORTHO05D000425 8.5e-07 56.2 98 35.7
SalBow1G8029 Salvia bowleyana HOM05D000573 ORTHO05D000425 8.5e-07 56.2 97 36.1
Solyc04g063210.3 Solanum lycopersicum HOM05D000573 ORTHO05D000425 8.5e-07 56.2 97 36.1
GSVIVG01015245001 Vitis vinifera HOM05D000573 ORTHO05D000425 8.5e-07 56.2 97 36.1
Atru.chr7.1535 Acer truncatum HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 35.1
AL7G26750 Arabidopsis lyrata HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 37.1
arahy.Tifrunner.gnm1.ann1.CIDH9E Arachis hypogaea HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 36.1
arahy.Tifrunner.gnm1.ann1.I1NPUK Arachis hypogaea HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 36.1
Carub.0007s1473 Capsella rubella HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 37.1
CiPaw.04G152600 Carya illinoinensis HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 36.1
CiPaw.04G152900 Carya illinoinensis HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 36.1
Duzib187G1209 Durio zibethinus HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 36.1
Lj4C315T3 Lonicera japonica HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 35.1
Nitab4.5_0005381g0040 Nicotiana tabacum HOM05D000573 ORTHO05D000425 1.1e-06 55.8 97 36.1
Cfa003124 Carpinus fangiana HOM05D000573 ORTHO05D000425 1.5e-06 55.5 96 35.4
Gohir.D08G265700 Gossypium hirsutum HOM05D000573 ORTHO05D000425 1.5e-06 55.5 97 37.1
Nitab4.5_0001492g0030 Nicotiana tabacum HOM05D000573 ORTHO05D000425 1.5e-06 55.5 33 69.7
Peaxi162Scf00461g00810 Petunia axillaris HOM05D000573 ORTHO05D000425 1.5e-06 55.5 33 69.7
SalBow1G3918 Salvia bowleyana HOM05D000573 ORTHO05D000425 1.5e-06 55.5 97 36.1
SalBow1G5291 Salvia bowleyana HOM05D000573 ORTHO05D000425 1.5e-06 55.5 97 36.1
Solyc05g041670.3 Solanum lycopersicum HOM05D000573 ORTHO05D000425 1.5e-06 55.5 31 77.4
AUR62005608 Chenopodium quinoa HOM05D000573 ORTHO05D000425 1.9e-06 55.1 52 53.8
COL.COLO4_18237 Corchorus olitorius HOM05D000573 ORTHO05D000425 1.9e-06 55.1 97 36.1
DCAR_012003 Daucus carota HOM05D000573 ORTHO05D000425 1.9e-06 55.1 97 35.1
Eucgr.C00927 Eucalyptus grandis HOM05D000573 ORTHO05D000425 1.9e-06 55.1 97 37.1
Lj4C315T0 Lonicera japonica HOM05D000573 ORTHO05D000425 1.9e-06 55.1 97 36.1
QL02p063430 Quercus lobata HOM05D000573 ORTHO05D000425 1.9e-06 55.1 97 35.1
Atru.chr7.1534 Acer truncatum HOM05D000573 ORTHO05D000425 2.5e-06 54.7 96 35.4
BcaC09g50682 Brassica carinata HOM05D000573 ORTHO05D000425 2.5e-06 54.7 97 34.0
C01p22070 Brassica napus HOM05D000573 ORTHO05D000425 2.5e-06 54.7 97 34.0
BolC1t02136H Brassica oleracea HOM05D000573 ORTHO05D000425 2.5e-06 54.7 97 34.0
Ciclev10009335m.g Citrus clementina HOM05D000573 ORTHO05D000425 2.5e-06 54.7 97 36.1
Migut.K00576 Erythranthe guttata HOM05D000573 ORTHO05D000425 2.5e-06 54.7 97 36.1
FvH4_1g06860 Fragaria vesca HOM05D000573 ORTHO05D000425 2.5e-06 54.7 98 36.7
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.5e-06 54.7 98 36.7
FAN26G3302 Fragaria x ananassa HOM05D000573 ORTHO05D000425 2.5e-06 54.7 98 36.7
FAN26G3364 Fragaria x ananassa HOM05D000573 ORTHO05D000425 2.5e-06 54.7 98 36.7
Glyma.08G030400 Glycine max HOM05D000573 ORTHO05D000425 2.5e-06 54.7 97 38.1
Potri.018G070300 Populus trichocarpa HOM05D000573 ORTHO05D000425 2.5e-06 54.7 97 35.1
QL02p063376 Quercus lobata HOM05D000573 ORTHO05D000425 2.5e-06 54.7 107 35.5
QL02p063392 Quercus lobata HOM05D000573 ORTHO05D000425 2.5e-06 54.7 107 35.5
RcHm_v2.0_Chr2g0092641 Rosa chinensis HOM05D000573 ORTHO05D000425 2.5e-06 54.7 98 36.7
Thecc.09G093900 Theobroma cacao HOM05D000573 ORTHO05D000425 2.5e-06 54.7 97 36.1
VMungo0251G0558 Vigna mungo HOM05D000573 ORTHO05D000425 2.5e-06 54.7 97 37.1
AT4G26220 Arabidopsis thaliana HOM05D000573 ORTHO05D000425 3.2e-06 54.3 97 34.0
BcaNung02436 Brassica carinata HOM05D000573 ORTHO05D000425 3.2e-06 54.3 97 34.0
A01p17510 Brassica napus HOM05D000573 ORTHO05D000425 3.2e-06 54.3 97 34.0
Cc06_g11010 Coffea canephora HOM05D000573 ORTHO05D000425 3.2e-06 54.3 97 37.1
Duzib168G1277 Durio zibethinus HOM05D000573 ORTHO05D000425 3.2e-06 54.3 97 36.1
SalBow1G0122 Salvia bowleyana HOM05D000573 ORTHO05D000425 3.2e-06 54.3 97 35.1
Sopen03g006050 Solanum pennellii HOM05D000573 ORTHO05D000425 3.2e-06 54.3 33 66.7
Sopen04g026130 Solanum pennellii HOM05D000573 ORTHO05D000425 3.2e-06 54.3 97 35.1
PGSC0003DMG400002387 Solanum tuberosum HOM05D000573 ORTHO05D000425 3.2e-06 54.3 97 35.1
PGSC0003DMG400018688 Solanum tuberosum HOM05D000573 ORTHO05D000425 3.2e-06 54.3 33 66.7
BcaB03g12619 Brassica carinata HOM05D000573 ORTHO05D000425 4.2e-06 53.9 98 34.7
AUR62027468 Chenopodium quinoa HOM05D000573 ORTHO05D000425 4.2e-06 53.9 97 35.1
COL.COLO4_18236 Corchorus olitorius HOM05D000573 ORTHO05D000425 4.2e-06 53.9 97 36.1
Nitab4.5_0001492g0040 Nicotiana tabacum HOM05D000573 ORTHO05D000425 4.2e-06 53.9 97 36.1
Sp7g24220 Schrenkiella parvula HOM05D000573 ORTHO05D000425 4.2e-06 53.9 97 34.0
TWI34G0646 Tripterygium wilfordii HOM05D000573 ORTHO05D000425 4.2e-06 53.9 97 35.1
BcaC01g01185 Brassica carinata HOM05D000573 ORTHO05D000425 5.5e-06 53.5 98 34.7
C03p89130 Brassica napus HOM05D000573 ORTHO05D000425 5.5e-06 53.5 98 34.7
BolC3t21224H Brassica oleracea HOM05D000573 ORTHO05D000425 5.5e-06 53.5 98 34.7
CAN.G354.27 Capsicum annuum HOM05D000573 ORTHO05D000425 5.5e-06 53.5 43 58.1
Cpa.g.sc1655.2 Carica papaya HOM05D000573 ORTHO05D000425 5.5e-06 53.5 97 35.1
CiPaw.03G219300 Carya illinoinensis HOM05D000573 ORTHO05D000425 5.5e-06 53.5 97 36.1
AUR62027469 Chenopodium quinoa HOM05D000573 ORTHO05D000425 5.5e-06 53.5 97 34.0
AUR62031234 Chenopodium quinoa HOM05D000573 ORTHO05D000425 5.5e-06 53.5 97 37.1
Ca_25611_v3 Cicer arietinum L. HOM05D000573 ORTHO05D000425 5.5e-06 53.5 97 36.1
Haze_25877 Corylus avellana HOM05D000573 ORTHO05D000425 5.5e-06 53.5 98 34.7
Haze_25879 Corylus avellana HOM05D000573 ORTHO05D000425 5.5e-06 53.5 98 34.7
FvH4_1g06851 Fragaria vesca HOM05D000573 ORTHO05D000425 5.5e-06 53.5 98 36.7
FAN26G0881 Fragaria x ananassa HOM05D000573 ORTHO05D000425 5.5e-06 53.5 98 36.7
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.5e-06 53.5 98 35.7
Gorai.004G283700 Gossypium raimondii HOM05D000573 ORTHO05D000425 5.5e-06 53.5 97 36.1
RcHm_v2.0_Chr2g0092661 Rosa chinensis HOM05D000573 ORTHO05D000425 5.5e-06 53.5 98 35.7
RcHm_v2.0_Chr2g0092671 Rosa chinensis HOM05D000573 ORTHO05D000425 5.5e-06 53.5 98 35.7
vmacro10820 Vaccinium macrocarpon HOM05D000573 ORTHO05D000425 5.5e-06 53.5 97 34.0
Dinv36735 Davidia involucrata HOM05D000573 ORTHO05D000425 7.2e-06 53.1 97 34.0
ECA240G3300 Erigeron canadensis HOM05D000573 ORTHO05D000425 7.2e-06 53.1 97 33.0
FvH4_1g14010 Fragaria vesca HOM05D000573 ORTHO05D000425 7.2e-06 53.1 97 36.1
Lalb_Chr09g0331771 Lupinus albus HOM05D000573 ORTHO05D000425 7.2e-06 53.1 97 36.1
Peaxi162Scf01363g00001 Petunia axillaris HOM05D000573 ORTHO05D000425 7.2e-06 53.1 97 35.1
Glyma.01G004200 Glycine max HOM05D000573 ORTHO05D000425 9.5e-06 52.8 97 36.1
Glyma.05G223400 Glycine max HOM05D000573 ORTHO05D000425 9.5e-06 52.8 97 36.1
Glyma.08G030500 Glycine max HOM05D000573 ORTHO05D000425 9.5e-06 52.8 97 36.1
HanXRQChr09g0238291 Helianthus annuus HOM05D000573 ORTHO05D000425 9.5e-06 52.8 97 32.0
HanXRQChr09g0238311 Helianthus annuus HOM05D000573 ORTHO05D000425 9.5e-06 52.8 97 32.0
Nitab4.5_0001492g0060 Nicotiana tabacum HOM05D000573 ORTHO05D000425 9.5e-06 52.8 97 35.1
Phvul.002G305200 Phaseolus vulgaris HOM05D000573 ORTHO05D000425 9.5e-06 52.8 97 36.1
PGR142G2997 Punica granatum HOM05D000573 ORTHO05D000425 9.5e-06 52.8 97 35.1
Rhsim05G0032000 Rhododendron simsii HOM05D000573 ORTHO05D000425 9.5e-06 52.8 49 44.9
Thecc.09G093800 Theobroma cacao HOM05D000573 ORTHO05D000425 9.5e-06 52.8 97 35.1


User provided reference genes

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