Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g025660.1 Solanum lycopersicum HOM05D000012 ORTHO05D392228 4.9e-58 227.6 118 100.0
Medtr7g006540 Medicago truncatula HOM05D000012 ORTHO05D008917 3.4e-19 98.6 63 74.6
Psat3g207040 Pisum sativum HOM05D000012 ORTHO05D008917 3.4e-19 98.6 63 74.6
CAN.G624.3 Capsicum annuum HOM05D000012 ORTHO05D008917 4.5e-19 98.2 63 77.8
Nitab4.5_0002569g0070 Nicotiana tabacum HOM05D000012 ORTHO05D008917 4.5e-19 98.2 63 77.8
Nitab4.5_0004349g0010 Nicotiana tabacum HOM05D000012 ORTHO05D008917 4.5e-19 98.2 63 77.8
Peaxi162Scf00842g00426 Petunia axillaris HOM05D000012 ORTHO05D008917 4.5e-19 98.2 63 77.8
Solyc11g033283.1 Solanum lycopersicum HOM05D000012 ORTHO05D008917 4.5e-19 98.2 63 77.8
Sopen11g017120 Solanum pennellii HOM05D000012 ORTHO05D008917 4.5e-19 98.2 63 77.8
PGSC0003DMG400028026 Solanum tuberosum HOM05D000012 ORTHO05D008917 4.5e-19 98.2 63 77.8
Sc14g0009260 Simmondsia chinensis HOM05D000012 ORTHO05D008917 5.8e-19 97.8 63 77.8
Lj1g0014552 Lotus japonicus HOM05D000012 ORTHO05D008917 9.9e-19 97.1 63 73.0
Ca_04093_v3 Cicer arietinum L. HOM05D000012 ORTHO05D008917 1.3e-18 96.7 63 71.4
Lj6A840G35 Lonicera japonica HOM05D000012 ORTHO05D008917 1.7e-18 96.3 63 74.6
Ah.03g135530 Amaranthus hybridus HOM05D000012 ORTHO05D008917 2.2e-18 95.9 63 74.6
MD16G1142100 Malus domestica HOM05D000012 ORTHO05D008917 2.2e-18 95.9 63 73.0
Lalb_Chr17g0335691 Lupinus albus HOM05D000012 ORTHO05D008917 3.8e-18 95.1 63 69.8
GSVIVG01001106001 Vitis vinifera HOM05D000012 ORTHO05D008917 3.8e-18 95.1 63 73.0
Ah.02g131360 Amaranthus hybridus HOM05D000012 ORTHO05D008917 6.4e-18 94.4 63 71.4
arahy.Tifrunner.gnm1.ann1.82SVBS Arachis hypogaea HOM05D000012 ORTHO05D008917 8.4e-18 94.0 63 69.8
arahy.Tifrunner.gnm1.ann1.AD012R Arachis hypogaea HOM05D000012 ORTHO05D008917 8.4e-18 94.0 63 69.8
Oeu010262.1 Olea europaea HOM05D000012 ORTHO05D008917 8.4e-18 94.0 63 73.0
Hund06132 Selenicereus undatus HOM05D000012 ORTHO05D008917 8.4e-18 94.0 63 73.0
MELO3C017823.2 Cucumis melo HOM05D000012 ORTHO05D008917 1.1e-17 93.6 63 73.0
CsaV3_4G002150 Cucumis sativus L. HOM05D000012 ORTHO05D008917 1.1e-17 93.6 63 73.0
DCAR_031209 Daucus carota HOM05D000012 ORTHO05D008917 1.1e-17 93.6 63 69.8
Migut.K01046 Erythranthe guttata HOM05D000012 ORTHO05D008917 1.1e-17 93.6 63 71.4
MD13G1131800 Malus domestica HOM05D000012 ORTHO05D008917 1.1e-17 93.6 63 71.4
Prupe.1G213600 Prunus persica HOM05D000012 ORTHO05D008917 1.1e-17 93.6 63 71.4
Glyma.18G299200 Glycine max HOM05D000012 ORTHO05D008917 1.4e-17 93.2 63 68.3
SalBow2G2509 Salvia bowleyana HOM05D000012 ORTHO05D008917 1.4e-17 93.2 63 71.4
CSS0010127 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D008917 1.9e-17 92.8 63 74.6
CSS0030108 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D008917 1.9e-17 92.8 63 74.6
CANSAT01G2302 Cannabis sativa HOM05D000012 ORTHO05D008917 1.9e-17 92.8 63 69.8
Cc11_g14930 Coffea canephora HOM05D000012 ORTHO05D008917 1.9e-17 92.8 63 71.4
Lsat_1_v5_gn_4_381 Lactuca sativa HOM05D000012 ORTHO05D008917 1.9e-17 92.8 63 73.0
Manes.09G189000 Manihot esculenta HOM05D000012 ORTHO05D008917 1.9e-17 92.8 63 71.4
Phvul.008G003500 Phaseolus vulgaris HOM05D000012 ORTHO05D008917 1.9e-17 92.8 63 69.8
PGR119G1920 Punica granatum HOM05D000012 ORTHO05D008917 1.9e-17 92.8 63 69.8
Aa31LG3G14270 Aethionema arabicum HOM05D000012 ORTHO05D008917 2.4e-17 92.4 74 64.9
VMungo1383G2788 Vigna mungo HOM05D000012 ORTHO05D008917 2.4e-17 92.4 63 68.3
MSTRG.447 Avicennia marina HOM05D000012 ORTHO05D008917 3.2e-17 92.0 63 71.4
Ciclev10004541m.g Citrus clementina HOM05D000012 ORTHO05D008917 3.2e-17 92.0 63 69.8
Atru.chr12.1437 Acer truncatum HOM05D000012 ORTHO05D008917 4.2e-17 91.7 63 68.3
CiPaw.05G100300 Carya illinoinensis HOM05D000012 ORTHO05D008917 4.2e-17 91.7 63 71.4
AUR62005718 Chenopodium quinoa HOM05D000012 ORTHO05D008917 4.2e-17 91.7 63 73.0
Dinv04761 Davidia involucrata HOM05D000012 ORTHO05D008917 4.2e-17 91.7 63 71.4
Sed0024183 Sechium edule HOM05D000012 ORTHO05D008917 4.2e-17 91.7 63 69.8
THA.LOC104816702 Tarenaya hassleriana HOM05D000012 ORTHO05D008917 4.2e-17 91.7 63 71.4
AUR62028838 Chenopodium quinoa HOM05D000012 ORTHO05D008917 5.4e-17 91.3 63 73.0
ClCG07G012010 Citrullus lanatus HOM05D000012 ORTHO05D008917 5.4e-17 91.3 63 69.8
PSO478G2367 Papaver somniferum HOM05D000012 ORTHO05D008917 5.4e-17 91.3 63 69.8
BcaNung01158 Brassica carinata HOM05D000012 ORTHO05D008917 7.1e-17 90.9 63 68.3
BcaNung01881 Brassica carinata HOM05D000012 ORTHO05D008917 7.1e-17 90.9 63 68.3
Carub.0006s1156 Capsella rubella HOM05D000012 ORTHO05D008917 7.1e-17 90.9 74 62.2
CARHR200030 Cardamine hirsuta HOM05D000012 ORTHO05D008917 7.1e-17 90.9 74 62.2
HPP92_009860 Vanilla planifolia HOM05D000012 ORTHO05D008917 7.1e-17 90.9 63 69.8
EL10Ac6g13613 Beta vulgaris HOM05D000012 ORTHO05D008917 9.3e-17 90.5 63 69.8
Cpa.g.sc38.69 Carica papaya HOM05D000012 ORTHO05D008917 9.3e-17 90.5 63 68.3
MBI11_g07029_MAGBIO Magnolia biondii HOM05D000012 ORTHO05D008917 1.2e-16 90.1 63 65.1
TWI18G1434 Tripterygium wilfordii HOM05D000012 ORTHO05D008917 1.2e-16 90.1 63 71.4
unitig_8.g3114 Utricularia gibba HOM05D000012 ORTHO05D008917 1.2e-16 90.1 63 69.8
Aqoxy5G03067 Aquilegia oxysepala HOM05D000012 ORTHO05D008917 1.6e-16 89.7 63 69.8
AL6G24020 Arabidopsis lyrata HOM05D000012 ORTHO05D008917 1.6e-16 89.7 63 66.7
AT5G13400 Arabidopsis thaliana HOM05D000012 ORTHO05D008917 1.6e-16 89.7 63 66.7
Thhalv10012967m.g Eutrema salsugineum HOM05D000012 ORTHO05D008917 1.6e-16 89.7 63 66.7
PSO017G0661 Papaver somniferum HOM05D000012 ORTHO05D008917 1.6e-16 89.7 63 68.3
PSO478G0280 Papaver somniferum HOM05D000012 ORTHO05D008917 1.6e-16 89.7 63 68.3
Sabra01G0047800 Salix brachista HOM05D000012 ORTHO05D008917 1.6e-16 89.7 63 71.4
Sp6g30620 Schrenkiella parvula HOM05D000012 ORTHO05D008917 1.6e-16 89.7 63 66.7
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 1.6e-16 89.7 63 69.8
A02p01890 Brassica napus HOM05D000012 ORTHO05D008917 2.1e-16 89.4 63 66.7
C02p06110 Brassica napus HOM05D000012 ORTHO05D008917 2.1e-16 89.4 63 66.7
BolC2t06552H Brassica oleracea HOM05D000012 ORTHO05D008917 2.1e-16 89.4 63 66.7
BraA02t05162Z Brassica rapa HOM05D000012 ORTHO05D008917 2.1e-16 89.4 63 66.7
ECA234G0588 Erigeron canadensis HOM05D000012 ORTHO05D008917 2.1e-16 89.4 63 69.8
Potri.001G068600 Populus trichocarpa HOM05D000012 ORTHO05D008917 2.1e-16 89.4 63 69.8
Rhsim12G0016400 Rhododendron simsii HOM05D000012 ORTHO05D008917 2.1e-16 89.4 63 69.8
FvH4_4g22520 Fragaria vesca HOM05D000012 ORTHO05D008917 2.7e-16 89.0 63 69.8
FAN12G1966 Fragaria x ananassa HOM05D000012 ORTHO05D008917 2.7e-16 89.0 63 69.8
FAN17G1010 Fragaria x ananassa HOM05D000012 ORTHO05D008917 2.7e-16 89.0 63 69.8
PSO017G6846 Papaver somniferum HOM05D000012 ORTHO05D008917 2.7e-16 89.0 63 68.3
Eucgr.G01980 Eucalyptus grandis HOM05D000012 ORTHO05D008917 3.5e-16 88.6 63 66.7
vmacro01012 Vaccinium macrocarpon HOM05D000012 ORTHO05D008917 3.5e-16 88.6 63 69.8
Actinidia30581 Actinidia chinensis HOM05D000012 ORTHO05D008917 4.6e-16 88.2 63 69.8
CSS0016668 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D008917 4.6e-16 88.2 63 71.4
CDE05G1461 Ceratophyllum demersum HOM05D000012 ORTHO05D008917 4.6e-16 88.2 63 66.7
CDE05G1448 Ceratophyllum demersum HOM05D000012 ORTHO05D008917 6.0e-16 87.8 63 65.1
COL.COLO4_34044 Corchorus olitorius HOM05D000012 ORTHO05D008917 6.0e-16 87.8 63 66.7
HanXRQChr17g0568731 Helianthus annuus HOM05D000012 ORTHO05D008917 6.0e-16 87.8 63 68.3
RcHm_v2.0_Chr4g0428751 Rosa chinensis HOM05D000012 ORTHO05D008917 6.0e-16 87.8 63 68.3
Duzib132G0323 Durio zibethinus HOM05D000012 ORTHO05D008917 7.9e-16 87.4 63 66.7
Thecc.02G191000 Theobroma cacao HOM05D000012 ORTHO05D008917 1.3e-15 86.7 63 66.7
THA.LOC104825455 Tarenaya hassleriana HOM05D000012 ORTHO05D008917 2.3e-15 85.9 63 66.7
Haze_12511 Corylus avellana HOM05D000012 ORTHO05D008917 3.9e-15 85.1 63 65.1
Sc17g0004730 Simmondsia chinensis HOM05D000012 ORTHO05D008917 3.9e-15 85.1 63 66.7
Cfa009458 Carpinus fangiana HOM05D001551 ORTHO05D008917 5.1e-15 84.7 63 65.1
FAN07G0936 Fragaria x ananassa HOM05D000012 ORTHO05D008917 5.1e-15 84.7 63 66.7
QL03p048967 Quercus lobata HOM05D000012 ORTHO05D008917 6.7e-15 84.3 63 66.7
Gohir.A03G152700 Gossypium hirsutum HOM05D000012 ORTHO05D008917 8.7e-15 84.0 63 63.5
Duzib248G0379 Durio zibethinus HOM05D000012 ORTHO05D008917 1.1e-14 83.6 63 65.1
Gohir.D02G175700 Gossypium hirsutum HOM05D000012 ORTHO05D008917 1.5e-14 83.2 63 63.5
Gorai.005G197300 Gossypium raimondii HOM05D000012 ORTHO05D008917 1.5e-14 83.2 63 63.5
ATR0582G310 Amborella trichopoda HOM05D000012 ORTHO05D008917 3.3e-14 82.0 63 65.1
TPR.G9698 Trifolium pratense HOM05D000012 ORTHO05D008917 3.3e-14 82.0 74 55.4
TAR629G0555 Trochodendron aralioides HOM05D000012 ORTHO05D008917 3.3e-14 82.0 50 78.0
Zm00001eb126980 Zea mays HOM05D000012 ORTHO05D008917 1.6e-13 79.7 63 66.7
Os01g0103100 Oryza sativa ssp. japonica HOM05D000012 ORTHO05D008917 8.4e-10 67.4 63 58.7
THA.LOC104816705 Tarenaya hassleriana HOM05D000012 ORTHO05D008917 3.0e-07 58.9 33 81.8
PGSC0003DMG400020318 Solanum tuberosum HOM05D000012 ORTHO05D000567 6.7e-07 57.8 97 36.1
SMO134G0106 Selaginella moellendorffii HOM05D000012 ORTHO05D000567 8.7e-07 57.4 103 35.0
Peaxi162Scf00141g00717 Petunia axillaris HOM05D000012 ORTHO05D000567 2.5e-06 55.8 90 36.7
Solyc09g014220.3 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.5e-06 55.8 97 35.1
Sopen09g007100 Solanum pennellii HOM05D000012 ORTHO05D000567 2.5e-06 55.8 97 35.1
Mapoly0099s0055 Marchantia polymorpha HOM05D000012 ORTHO05D000567 3.3e-06 55.5 63 38.1
CSS0044798 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D000567 5.6e-06 54.7 68 41.2
Ah.02g115470 Amaranthus hybridus HOM05D000012 ORTHO05D000567 7.4e-06 54.3 78 35.9
GSVIVG01024796001 Vitis vinifera HOM05D000012 ORTHO05D000567 7.4e-06 54.3 91 34.1


User provided reference genes

Program Settings