Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g023880.2 Solanum lycopersicum HOM05D000001 ORTHO05D392570 3.0e-26 120.9 56 100.0
PGSC0003DMG400042500 Solanum tuberosum HOM05D000001 ORTHO05D000003 8.0e-19 96.3 50 84.0
Solyc05g023900.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.0e-18 94.0 50 82.0
Sopen05g018650 Solanum pennellii HOM05D000001 ORTHO05D000003 4.0e-18 94.0 50 82.0
CAN.G843.40 Capsicum annuum HOM05D000001 ORTHO05D000003 2.0e-17 91.7 51 82.4
Nitab4.5_0000609g0010 Nicotiana tabacum HOM05D000001 ORTHO05D021101 9.8e-17 89.4 50 80.0
Peaxi162Scf00128g00176 Petunia axillaris HOM05D000001 ORTHO05D000003 2.9e-16 87.8 50 76.0
Nitab4.5_0001408g0010 Nicotiana tabacum HOM05D000001 ORTHO05D021101 6.4e-16 86.7 49 79.6
MSTRG.8044 Avicennia marina HOM05D000001 ORTHO05D000003 7.8e-14 79.7 49 67.3
ECA246G2579 Erigeron canadensis HOM05D000001 ORTHO05D000003 7.8e-14 79.7 51 64.7
Migut.H01698 Erythranthe guttata HOM05D000001 ORTHO05D000003 7.8e-14 79.7 49 69.4
Lj3P1010T35 Lonicera japonica HOM05D000001 ORTHO05D000003 7.8e-14 79.7 49 65.3
Dinv37811 Davidia involucrata HOM05D000001 ORTHO05D000003 1.3e-13 79.0 49 63.3
Manes.10G123700 Manihot esculenta HOM05D000001 ORTHO05D000003 1.3e-13 79.0 49 65.3
Lj3C87T3 Lonicera japonica HOM05D000001 ORTHO05D000003 1.7e-13 78.6 49 63.3
Actinidia22127 Actinidia chinensis HOM05D000001 ORTHO05D021101 2.3e-13 78.2 49 61.2
Actinidia30599 Actinidia chinensis HOM05D000001 ORTHO05D021101 3.9e-13 77.4 49 63.3
TPR.G8610 Trifolium pratense HOM05D000001 ORTHO05D000003 6.6e-13 76.6 49 67.3
Oeu003276.2 Olea europaea HOM05D000001 ORTHO05D000003 1.1e-12 75.9 47 61.7
CSS0007422 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.5e-12 75.5 48 62.5
Gohir.D12G144900 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.5e-12 75.5 49 59.2
Gorai.008G156300 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.5e-12 75.5 49 59.2
Phvul.003G008700 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.5e-12 75.5 49 65.3
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 1.5e-12 75.5 49 67.3
HanXRQChr06g0175051 Helianthus annuus HOM05D000001 ORTHO05D000003 1.9e-12 75.1 49 61.2
Sabra03G0120000 Salix brachista HOM05D000001 ORTHO05D000003 2.5e-12 74.7 49 59.2
Potri.003G164900 Populus trichocarpa HOM05D000001 ORTHO05D000003 3.3e-12 74.3 49 59.2
Aa31LG3G14430 Aethionema arabicum HOM05D000001 ORTHO05D000003 4.3e-12 73.9 49 59.2
Duzib248G0680 Durio zibethinus HOM05D000001 ORTHO05D000003 4.3e-12 73.9 49 57.1
Thhalv10012703m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 4.3e-12 73.9 50 64.0
Gohir.A12G140300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 4.3e-12 73.9 49 57.1
Lsat_1_v5_gn_3_31441 Lactuca sativa HOM05D000001 ORTHO05D000003 4.3e-12 73.9 49 61.2
Thecc.02G195700 Theobroma cacao HOM05D000001 ORTHO05D000003 5.6e-12 73.6 49 59.2
Atru.chr11.2412 Acer truncatum HOM05D000001 ORTHO05D000003 7.3e-12 73.2 49 59.2
Ca_06391_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 7.3e-12 73.2 49 63.3
Medtr5g095690 Medicago truncatula HOM05D000001 ORTHO05D000003 7.3e-12 73.2 49 63.3
Lalb_Chr09g0332111 Lupinus albus HOM05D000001 ORTHO05D000003 9.5e-12 72.8 48 64.6
Rhsim12G0018300 Rhododendron simsii HOM05D000001 ORTHO05D000003 9.5e-12 72.8 49 59.2
CSS0011746 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.2e-11 72.4 48 60.4
Prupe.1G218200 Prunus persica HOM05D000001 ORTHO05D000003 1.2e-11 72.4 48 58.3
PGR119G2213 Punica granatum HOM05D000001 ORTHO05D000003 1.6e-11 72.0 49 59.2
VMungo1215G0759 Vigna mungo HOM05D000001 ORTHO05D000003 1.6e-11 72.0 49 61.2
MD13G1127800 Malus domestica HOM05D000001 ORTHO05D000003 2.1e-11 71.6 48 56.2
Ciclev10033965m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.8e-11 71.2 49 61.2
AL6G23840 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 3.6e-11 70.9 48 56.2
AT5G13230 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 4.7e-11 70.5 48 56.2
Cc05_g02950 Coffea canephora HOM05D000001 ORTHO05D000003 4.7e-11 70.5 47 59.6
RcHm_v2.0_Chr4g0429241 Rosa chinensis HOM05D000001 ORTHO05D000003 4.7e-11 70.5 48 54.2
TWI75G0374 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 4.7e-11 70.5 49 57.1
BcaC04g19134 Brassica carinata HOM05D000001 ORTHO05D000003 6.2e-11 70.1 50 58.0
BolC9t59225H Brassica oleracea HOM05D000001 ORTHO05D000003 6.2e-11 70.1 50 58.0
C09p63850 Brassica napus HOM05D000001 ORTHO05D000003 8.0e-11 69.7 50 60.0
Nn4g22187 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.0e-11 69.7 51 54.9
SalBow5G3808 Salvia bowleyana HOM05D000001 ORTHO05D000003 8.0e-11 69.7 49 61.2
A10p24980 Brassica napus HOM05D000001 ORTHO05D000003 1.1e-10 69.3 50 58.0
Glyma.07G159200 Glycine max HOM05D000001 ORTHO05D000003 1.4e-10 68.9 49 59.2
Lj1g0024556 Lotus japonicus HOM05D000001 ORTHO05D000003 1.4e-10 68.9 49 61.2
Ah.03g135700 Amaranthus hybridus HOM05D000001 ORTHO05D000003 1.8e-10 68.6 47 55.3
FvH4_4g22970 Fragaria vesca HOM05D000001 ORTHO05D000003 1.8e-10 68.6 47 55.3
FAN12G2372 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-10 68.6 47 55.3
FAN17G1545 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-10 68.6 47 55.3
arahy.Tifrunner.gnm1.ann1.97P92R Arachis hypogaea HOM05D000001 ORTHO05D000003 2.3e-10 68.2 49 57.1
arahy.Tifrunner.gnm1.ann1.P1EZAI Arachis hypogaea HOM05D000001 ORTHO05D000003 2.3e-10 68.2 49 57.1
CANSAT21G1020 Cannabis sativa HOM05D000001 ORTHO05D000003 2.3e-10 68.2 48 60.4
COL.COLO4_04770 Corchorus olitorius HOM05D000001 ORTHO05D000003 2.3e-10 68.2 49 53.1
Aqoxy1G01572 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.1e-10 67.8 49 55.1
CARHR200220 Cardamine hirsuta HOM05D000001 ORTHO05D000003 3.1e-10 67.8 49 59.2
GSVIVG01000968001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.1e-10 67.8 49 51.0
QL03p050084 Quercus lobata HOM05D000001 ORTHO05D000003 4.0e-10 67.4 49 55.1
THA.LOC104825470 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 4.0e-10 67.4 50 58.0
Eucgr.G01955 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.8e-10 66.6 49 53.1
TAR374G0345 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.2e-09 65.9 49 57.1
CiPaw.05G103500 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.5e-09 65.5 49 53.1
Sed0005038 Sechium edule HOM05D000001 ORTHO05D000003 2.0e-09 65.1 49 53.1
Cpa.g.sc207.11 Carica papaya HOM05D000001 ORTHO05D000003 2.6e-09 64.7 49 51.0
Sp6g30760 Schrenkiella parvula HOM05D000001 ORTHO05D000003 3.4e-09 64.3 49 55.1
AUR62028860 Chenopodium quinoa HOM05D000001 ORTHO05D000003 4.4e-09 63.9 47 55.3
HPP92_024106 Vanilla planifolia HOM05D000001 ORTHO05D021101 4.4e-09 63.9 47 53.2
HPP92_024127 Vanilla planifolia HOM05D000001 ORTHO05D021101 4.4e-09 63.9 47 53.2
MELO3C017802.2 Cucumis melo HOM05D000001 ORTHO05D000003 7.5e-09 63.2 49 51.0
CsaV3_4G002410 Cucumis sativus L. HOM05D000001 ORTHO05D000003 7.5e-09 63.2 49 51.0
EL10Ac6g13589 Beta vulgaris HOM05D000001 ORTHO05D000003 1.3e-08 62.4 47 53.2
Sc04g0010490 Simmondsia chinensis HOM05D000001 ORTHO05D000003 1.3e-08 62.4 47 46.8
Cfa009428 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.7e-08 62.0 47 53.2
Haze_12479 Corylus avellana HOM05D000001 ORTHO05D000003 1.7e-08 62.0 47 53.2
CiPaw.06G107900 Carya illinoinensis HOM05D000001 ORTHO05D128105 6.4e-08 60.1 49 51.0
ClCG07G011790 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.1e-07 59.3 49 49.0
Zm00001eb279920 Zea mays HOM05D000001 ORTHO05D000003 1.4e-07 58.9 48 52.1


User provided reference genes

Program Settings