Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g023870.1 Solanum lycopersicum HOM05D000001 ORTHO05D391510 2.2e-54 215.3 106 100.0
PGSC0003DMG400042500 Solanum tuberosum HOM05D000001 ORTHO05D000003 2.0e-26 122.5 103 63.1
Sopen05g018650 Solanum pennellii HOM05D000001 ORTHO05D000003 9.8e-26 120.2 104 61.5
Solyc05g023900.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.9e-24 115.9 104 62.5
Nitab4.5_0000609g0010 Nicotiana tabacum HOM05D000001 ORTHO05D021101 9.5e-21 103.6 80 66.2
Nitab4.5_0001408g0010 Nicotiana tabacum HOM05D000001 ORTHO05D021101 2.3e-19 99.0 80 63.8
CAN.G843.40 Capsicum annuum HOM05D000001 ORTHO05D000003 6.4e-17 90.9 79 63.3
Solyc05g023860.1 Solanum lycopersicum HOM05D000001 ORTHO05D391793 9.2e-16 87.0 53 77.4
Haze_12479 Corylus avellana HOM05D000001 ORTHO05D000003 5.6e-13 77.8 70 55.7
TAR374G0345 Trochodendron aralioides HOM05D000001 ORTHO05D000003 7.3e-13 77.4 76 51.3
Oeu003276.2 Olea europaea HOM05D000001 ORTHO05D000003 9.5e-13 77.0 79 48.1
Cc05_g02950 Coffea canephora HOM05D000001 ORTHO05D000003 2.1e-12 75.9 63 57.1
Cfa009428 Carpinus fangiana HOM05D000001 ORTHO05D000003 2.8e-12 75.5 70 52.9
Actinidia30600 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.6e-12 75.1 73 49.3
QL03p050084 Quercus lobata HOM05D000001 ORTHO05D000003 4.7e-12 74.7 70 52.9
Dinv37811 Davidia involucrata HOM05D000001 ORTHO05D000003 3.1e-11 72.0 82 45.1
TWI75G0374 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 3.1e-11 72.0 72 51.4
Rhsim12G0018300 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.0e-11 71.6 67 53.7
EL10Ac6g13589 Beta vulgaris HOM05D000001 ORTHO05D000003 6.8e-11 70.9 68 48.5
Manes.10G123700 Manihot esculenta HOM05D000001 ORTHO05D000003 1.5e-10 69.7 80 40.0
GSVIVG01000968001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.0e-10 69.3 67 50.7
SalBow5G3808 Salvia bowleyana HOM05D000001 ORTHO05D000003 3.4e-10 68.6 68 50.0
Lj3C87T3 Lonicera japonica HOM05D000001 ORTHO05D000003 5.8e-10 67.8 77 45.5
CSS0011746 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 7.6e-10 67.4 66 50.0
DCAR_023369 Daucus carota HOM05D000001 ORTHO05D000003 7.6e-10 67.4 69 50.7
Aqoxy1G01572 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 9.9e-10 67.0 65 47.7
CSS0007422 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 9.9e-10 67.0 66 50.0
HanXRQChr06g0175051 Helianthus annuus HOM05D000001 ORTHO05D000003 2.2e-09 65.9 70 50.0
CiPaw.05G103500 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.9e-09 65.5 57 57.9
Sabra03G0120000 Salix brachista HOM05D000001 ORTHO05D000003 4.9e-09 64.7 74 41.9
Lsat_1_v5_gn_3_31441 Lactuca sativa HOM05D000001 ORTHO05D000003 6.4e-09 64.3 81 44.4
COL.COLO4_04770 Corchorus olitorius HOM05D000001 ORTHO05D000003 8.4e-09 63.9 67 47.8
Gohir.A12G140300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.4e-08 63.2 71 46.5
MD13G1127800 Malus domestica HOM05D000001 ORTHO05D000003 1.4e-08 63.2 72 43.1
RcHm_v2.0_Chr4g0429241 Rosa chinensis HOM05D000001 ORTHO05D000003 1.9e-08 62.8 65 46.2
CARHR200220 Cardamine hirsuta HOM05D000001 ORTHO05D000003 2.4e-08 62.4 74 39.2
Gorai.008G156300 Gossypium raimondii HOM05D000001 ORTHO05D000003 3.2e-08 62.0 71 46.5
MBI16_g36317_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 3.2e-08 62.0 67 46.3
Prupe.1G218200 Prunus persica HOM05D000001 ORTHO05D000003 4.1e-08 61.6 72 43.1
AL6G23840 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 5.4e-08 61.2 74 37.8
ECA246G2579 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.4e-08 61.2 65 47.7
Potri.003G164900 Populus trichocarpa HOM05D000001 ORTHO05D000003 5.4e-08 61.2 74 39.2
PGR119G2213 Punica granatum HOM05D000001 ORTHO05D000003 5.4e-08 61.2 69 42.0
Thecc.02G195700 Theobroma cacao HOM05D000001 ORTHO05D000003 9.2e-08 60.5 73 43.8
CANSAT21G1020 Cannabis sativa HOM05D000001 ORTHO05D000003 1.2e-07 60.1 65 47.7
Ah.03g135700 Amaranthus hybridus HOM05D000001 ORTHO05D000003 1.6e-07 59.7 68 41.2
Ciclev10033965m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.6e-07 59.7 68 42.6
MELO3C017802.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.6e-07 59.7 65 43.1
Gohir.D12G144900 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.1e-07 59.3 71 45.1
AUR62028860 Chenopodium quinoa HOM05D000001 ORTHO05D000003 2.7e-07 58.9 72 40.3
AT5G13230 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 3.5e-07 58.5 68 42.6
Medtr5g095690 Medicago truncatula HOM05D000001 ORTHO05D000003 3.5e-07 58.5 69 44.9
Sed0005038 Sechium edule HOM05D000001 ORTHO05D000003 3.5e-07 58.5 67 44.8
Carub.0006s1140 Capsella rubella HOM05D000001 ORTHO05D000003 4.6e-07 58.2 74 36.5
Migut.H01698 Erythranthe guttata HOM05D000001 ORTHO05D000003 4.6e-07 58.2 107 36.4
arahy.Tifrunner.gnm1.ann1.P1EZAI Arachis hypogaea HOM05D000001 ORTHO05D000003 6.0e-07 57.8 68 41.2
Atru.chr11.2412 Acer truncatum HOM05D000001 ORTHO05D000003 7.8e-07 57.4 70 38.6
ClCG07G011790 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.0e-06 57.0 64 42.2
arahy.Tifrunner.gnm1.ann1.97P92R Arachis hypogaea HOM05D000001 ORTHO05D000003 1.3e-06 56.6 68 41.2
AUR62005697 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.3e-06 56.6 63 44.4
CsaV3_4G002410 Cucumis sativus L. HOM05D000001 ORTHO05D000003 1.3e-06 56.6 65 41.5
Sc04g0010490 Simmondsia chinensis HOM05D000001 ORTHO05D000003 1.3e-06 56.6 65 44.6
Thhalv10012703m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 2.3e-06 55.8 68 38.2
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 2.3e-06 55.8 69 43.5
Aa31LG3G14430 Aethionema arabicum HOM05D000001 ORTHO05D000003 3.0e-06 55.5 64 40.6
HPP92_024126 Vanilla planifolia HOM05D000001 ORTHO05D000003 3.9e-06 55.1 63 47.6
Duzib248G0680 Durio zibethinus HOM05D000001 ORTHO05D000003 5.1e-06 54.7 57 49.1
FAN07G1199 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.1e-06 54.7 65 41.5
Lj1g0024556 Lotus japonicus HOM05D000001 ORTHO05D000003 5.1e-06 54.7 64 43.8
BcaC04g19134 Brassica carinata HOM05D000001 ORTHO05D000003 6.6e-06 54.3 68 41.2
BolC9t59225H Brassica oleracea HOM05D000001 ORTHO05D000003 6.6e-06 54.3 68 41.2
FvH4_4g22970 Fragaria vesca HOM05D000001 ORTHO05D000003 6.6e-06 54.3 65 41.5
FAN12G2372 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.6e-06 54.3 65 41.5
FAN17G1545 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.6e-06 54.3 65 41.5
HPP92_024108 Vanilla planifolia HOM05D000001 ORTHO05D000003 6.6e-06 54.3 63 47.6


User provided reference genes

Program Settings