Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g023630.1 Solanum lycopersicum HOM05D004181 ORTHO05D005610 1.9e-40 168.7 83 100.0
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 2.4e-27 125.2 79 78.5
Sopen08g004800 Solanum pennellii HOM05D004181 ORTHO05D005610 2.4e-27 125.2 79 78.5
Peaxi162Scf00075g01553 Petunia axillaris HOM05D004181 ORTHO05D005610 1.6e-26 122.5 79 77.2
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 8.5e-25 116.7 79 73.4
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 9.4e-24 113.2 78 73.1
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 9.4e-24 113.2 80 70.0
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 2.1e-23 112.1 80 67.5
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 2.1e-23 112.1 80 68.8
COL.COLO4_13939 Corchorus olitorius HOM05D004181 ORTHO05D005610 4.7e-23 110.9 80 68.8
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 6.1e-23 110.5 80 70.0
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 6.1e-23 110.5 80 70.0
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 8.0e-23 110.2 80 68.8
Gohir.A10G101825 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.4e-22 109.4 80 68.8
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 3.0e-22 108.2 80 67.5
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 4.0e-22 107.8 80 66.2
GSVIVG01017819001 Vitis vinifera HOM05D004181 ORTHO05D005610 4.0e-22 107.8 80 67.5
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 5.2e-22 107.5 80 68.8
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 6.7e-22 107.1 80 66.2
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 6.7e-22 107.1 80 66.2
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 6.7e-22 107.1 77 68.8
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 1.1e-21 106.3 80 66.2
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 1.5e-21 105.9 80 66.2
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 2.0e-21 105.5 80 65.0
SalBow5G0241 Salvia bowleyana HOM05D004181 ORTHO05D005610 3.3e-21 104.8 80 65.0
SalBow5G5345 Salvia bowleyana HOM05D004181 ORTHO05D005610 3.3e-21 104.8 80 65.0
SGA_v2.0_scaffold89G27558 Striga asiatica HOM05D004181 ORTHO05D005610 4.4e-21 104.4 80 63.8
Gohir.A02G045700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 5.7e-21 104.0 80 65.0
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 5.7e-21 104.0 80 65.0
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 5.7e-21 104.0 80 65.0
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 7.5e-21 103.6 80 63.8
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 7.5e-21 103.6 80 63.8
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 1.3e-20 102.8 80 63.8
Cpa.g.sc16.105 Carica papaya HOM05D004181 ORTHO05D005610 1.7e-20 102.4 80 65.0
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 1.7e-20 102.4 77 64.9
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 1.7e-20 102.4 77 64.9
Lalb_Chr15g0087091 Lupinus albus HOM05D004181 ORTHO05D005610 3.7e-20 101.3 79 64.6
DCAR_024617 Daucus carota HOM05D004181 ORTHO05D005610 4.8e-20 100.9 79 62.0
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 4.8e-20 100.9 78 64.1
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 6.3e-20 100.5 80 63.8
CiPaw.02G087200 Carya illinoinensis HOM05D004181 ORTHO05D005610 6.3e-20 100.5 80 60.0
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 6.3e-20 100.5 78 66.7
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 6.3e-20 100.5 76 65.8
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 6.3e-20 100.5 76 65.8
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 6.3e-20 100.5 76 65.8
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 6.3e-20 100.5 76 65.8
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 8.2e-20 100.1 80 61.2
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 8.2e-20 100.1 80 61.2
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 1.1e-19 99.8 80 62.5
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 1.4e-19 99.4 77 63.6
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 1.8e-19 99.0 81 63.0
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 1.8e-19 99.0 80 62.5
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 2.4e-19 98.6 80 62.5
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 2.4e-19 98.6 80 63.8
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 2.4e-19 98.6 77 63.6
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 2.4e-19 98.6 77 63.6
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 2.4e-19 98.6 77 64.9
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 4.1e-19 97.8 76 64.5
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 5.3e-19 97.4 77 62.3
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 7.0e-19 97.1 74 66.2
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 7.0e-19 97.1 76 64.5
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 9.1e-19 96.7 80 60.0
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 9.1e-19 96.7 77 63.6
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 9.1e-19 96.7 77 63.6
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 1.2e-18 96.3 80 61.2
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 1.2e-18 96.3 77 62.3
ClCG05G005760 Citrullus lanatus HOM05D004181 ORTHO05D005610 1.6e-18 95.9 80 62.5
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 1.6e-18 95.9 80 62.5
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 2.0e-18 95.5 77 61.0
Sc13g0003670 Simmondsia chinensis HOM05D004181 ORTHO05D005610 3.5e-18 94.7 77 63.6
PGSC0003DMG400016756 Solanum tuberosum HOM05D004181 ORTHO05D005610 5.9e-18 94.0 88 61.4
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 1.0e-17 93.2 79 63.3
vmacro08213 Vaccinium macrocarpon HOM05D004181 ORTHO05D005610 1.0e-17 93.2 77 61.0
Lsat_1_v5_gn_6_15980 Lactuca sativa HOM05D004181 ORTHO05D005610 1.3e-17 92.8 80 58.8
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 2.9e-17 91.7 80 56.2
THA.LOC104820110 Tarenaya hassleriana HOM05D004181 ORTHO05D005610 2.9e-17 91.7 78 61.5
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 5.0e-17 90.9 80 60.0
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 5.0e-17 90.9 80 60.0
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 5.0e-17 90.9 80 60.0
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 5.0e-17 90.9 80 60.0
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 8.5e-17 90.1 80 58.8
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 8.5e-17 90.1 80 58.8
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 1.1e-16 89.7 78 60.3
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 1.5e-16 89.4 80 58.8
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 1.5e-16 89.4 80 58.8
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 1.5e-16 89.4 80 58.8
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 2.5e-16 88.6 80 58.8
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 2.5e-16 88.6 80 58.8
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 2.5e-16 88.6 80 58.8
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 2.5e-16 88.6 80 58.8
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 4.2e-16 87.8 80 58.8
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 4.2e-16 87.8 80 58.8
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 4.2e-16 87.8 80 58.8
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 4.2e-16 87.8 80 57.5
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 4.2e-16 87.8 80 56.2
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 7.2e-16 87.0 80 57.5
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 1.2e-15 86.3 77 58.4
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 1.6e-15 85.9 78 59.0
PGR004G0905 Punica granatum HOM05D004181 ORTHO05D005610 1.6e-15 85.9 76 57.9
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 8.0e-15 83.6 80 57.5
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 1.4e-14 82.8 77 55.8
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 1.8e-14 82.4 64 62.5
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 1.8e-14 82.4 81 51.9
Rhsim13G0005700 Rhododendron simsii HOM05D004181 ORTHO05D005610 2.3e-14 82.0 74 56.8
SEGI_19119 Sequoiadendron giganteum HOM05D004181 ORTHO05D005610 2.3e-14 82.0 81 54.3
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 6.8e-14 80.5 64 62.5
SHI00295 Sapria himalayana HOM05D004181 ORTHO05D005610 2.0e-13 79.0 78 53.8
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 2.0e-13 79.0 83 53.0
Solyc05g021200.1 Solanum lycopersicum HOM05D004181 ORTHO05D005610 3.4e-13 78.2 58 65.5
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 6.3e-12 73.9 81 49.4
CDE12G0304 Ceratophyllum demersum HOM05D004181 ORTHO05D005610 8.3e-12 73.6 72 54.2
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 5.4e-11 70.9 81 46.9
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 5.4e-11 70.9 81 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2942 Anthoceros agrestis HOM05D004181 ORTHO05D005610 9.1e-11 70.1 80 45.0
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 4.5e-10 67.8 61 54.1
SMO144G0053 Selaginella moellendorffii HOM05D004181 ORTHO05D005610 4.5e-10 67.8 60 53.3
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 7.7e-10 67.0 75 49.3
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 2.9e-09 65.1 61 50.8
MCO07G673 Micromonas commoda HOM05D004181 ORTHO05D005610 3.2e-08 61.6 70 41.4
CBR_g38144 Chara braunii HOM05D004181 ORTHO05D005610 7.2e-08 60.5 60 51.7
Cre14.g612000 Chlamydomonas reinhardtii HOM05D004181 ORTHO05D005610 7.2e-08 60.5 59 47.5
PRCOL_00001584 Prasinoderma coloniale HOM05D004181 ORTHO05D005610 4.7e-07 57.8 54 48.1


User provided reference genes

Program Settings