Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 6.5e-183 644.0 352 100.0
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 6.5e-183 644.0 352 100.0
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 9.5e-150 533.9 352 78.1
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 4.9e-146 521.5 383 72.6
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 9.2e-145 517.3 295 97.6
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.9e-143 512.3 365 72.9
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 2.1e-133 479.6 353 70.5
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 1.5e-102 377.1 350 58.3
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 3.3e-102 375.9 366 57.9
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 1.5e-99 367.1 399 56.9
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 4.9e-98 362.1 369 56.4
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.4e-97 359.8 360 57.5
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 3.2e-97 359.4 363 58.1
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 3.5e-96 355.9 404 54.7
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 1.3e-95 354.0 369 58.8
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 3.0e-95 352.8 366 53.8
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.5e-94 350.5 362 56.9
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 4.3e-94 349.0 361 57.9
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 2.1e-93 346.7 365 55.1
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.1e-93 346.7 368 57.3
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 2.6e-91 339.7 353 55.2
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 2.2e-90 336.7 374 55.1
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 8.4e-90 334.7 369 52.0
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 7.1e-89 331.6 366 53.3
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 1.0e-87 327.8 376 54.8
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.3e-87 326.6 353 58.9
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 2.5e-86 323.2 359 55.2
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 3.3e-86 322.8 354 54.2
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 3.3e-86 322.8 295 60.0
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 9.6e-86 321.2 355 54.9
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 2.1e-85 320.1 352 53.1
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 5.3e-84 315.5 358 53.4
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 1.0e-82 311.2 298 58.1
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 1.0e-82 311.2 374 50.8
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.7e-82 310.5 352 51.1
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 5.0e-82 308.9 379 57.0
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 8.4e-82 308.1 368 50.8
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 1.4e-81 307.4 357 54.3
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 1.9e-81 307.0 370 52.2
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 9.3e-81 304.7 308 57.1
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 1.6e-80 303.9 349 54.4
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 2.7e-80 303.1 353 53.3
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 3.5e-80 302.8 358 52.2
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 1.8e-79 300.4 399 50.6
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 8.7e-79 298.1 384 49.7
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 1.5e-78 297.4 390 52.3
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 3.3e-78 296.2 325 53.8
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 3.7e-77 292.7 378 49.5
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 1.8e-76 290.4 302 59.3
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 4.1e-76 289.3 363 51.5
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 5.3e-76 288.9 378 49.2
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 6.9e-76 288.5 415 47.5
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 2.6e-75 286.6 291 57.4
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 2.6e-75 286.6 412 46.4
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 1.1e-73 281.2 304 53.3
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.1e-72 276.9 511 38.9
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 3.6e-72 276.2 363 54.0
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.0e-71 274.6 381 47.5
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 1.8e-71 273.9 337 51.3
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 3.9e-71 272.7 295 57.6
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.7e-69 267.3 296 56.4
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 2.2e-69 266.9 297 52.5
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 2.8e-69 266.5 347 49.0
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.0e-67 260.4 358 47.8
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 2.2e-66 256.9 294 49.7
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 2.9e-66 256.5 363 46.6
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.9e-66 256.5 361 47.6
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.1e-65 254.6 363 46.6
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 1.4e-65 254.2 367 46.3
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 2.5e-65 253.4 332 50.0
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 7.9e-64 248.4 439 39.4
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 3.0e-63 246.5 514 36.8
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.1e-62 244.6 362 46.7
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.7e-61 240.7 393 45.0
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.2e-61 240.4 305 50.5
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 2.2e-61 240.4 300 54.0
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 3.1e-60 236.5 442 39.1
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 1.0e-58 231.5 358 44.1
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.7e-58 230.7 384 43.8
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 6.5e-58 228.8 390 44.6
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 8.5e-58 228.4 298 45.3
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.1e-57 228.0 292 47.9
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 5.2e-55 219.2 382 43.5
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 8.8e-55 218.4 359 44.3
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 8.8e-55 218.4 326 47.2
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.6e-54 216.9 456 39.3
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 2.6e-54 216.9 345 48.7
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.8e-53 213.4 472 38.8
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 1.1e-52 211.5 376 43.4
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 2.4e-52 210.3 385 42.1
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 2.4e-52 210.3 298 45.6
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 3.1e-52 209.9 356 44.4
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 7.0e-52 208.8 390 41.8
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 3.5e-51 206.5 384 43.0
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 5.9e-51 205.7 276 44.6
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 3.8e-50 203.0 185 58.9
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 5.5e-49 199.1 235 53.2
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 6.8e-47 192.2 223 57.0
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 9.8e-46 188.3 370 42.7
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 9.8e-46 188.3 360 42.2
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 1.1e-44 184.9 314 51.0
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.1e-44 184.9 376 41.2
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 7.0e-44 182.2 349 41.8
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 2.9e-42 176.8 350 41.4
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 9.5e-41 171.8 476 33.8
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.0e-39 168.3 446 34.8
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 5.7e-38 162.5 280 43.6
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 1.8e-36 157.5 354 38.7
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 3.1e-36 156.8 379 37.5
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 3.1e-36 156.8 379 37.5
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 1.1e-33 148.3 403 36.5
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 2.5e-33 147.1 296 39.5
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.5e-33 147.1 343 38.2
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 7.3e-33 145.6 207 46.4
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 1.5e-30 137.9 235 48.9
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 4.9e-29 132.9 396 34.6
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.4e-28 130.6 297 36.7
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 3.2e-28 130.2 197 38.1
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 1.6e-27 127.9 194 45.4
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 3.5e-27 126.7 320 35.6
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 4.6e-19 99.8 382 32.7
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 6.6e-18 95.9 284 32.7
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 4.7e-16 89.7 313 34.8
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 4.4e-14 83.2 61 72.1
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 7.5e-14 82.4 72 68.1
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.7e-13 80.1 322 29.2
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 4.9e-13 79.7 318 31.1
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 2.4e-12 77.4 67 68.7
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 7.1e-12 75.9 59 66.1
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 7.1e-12 75.9 136 39.0
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 7.8e-11 72.4 308 30.2
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.5e-09 67.4 37 70.3
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 4.0e-07 60.1 37 62.2
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.5e-06 58.2 72 51.4
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 2.0e-06 57.8 123 37.4
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 7.6e-06 55.8 38 63.2


User provided reference genes

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