Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 1.9e-136 489.6 333 100.0
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 3.7e-135 485.3 333 99.4
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 4.1e-110 402.1 314 87.9
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.2e-109 400.6 333 86.2
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 4.8e-103 378.6 322 81.7
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 8.5e-100 367.9 315 74.3
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 3.2e-99 365.9 330 71.5
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 9.4e-99 364.4 330 78.5
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 8.2e-95 351.3 332 76.5
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.8e-94 350.1 339 73.5
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.8e-94 350.1 339 73.5
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 4.1e-94 349.0 314 81.8
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 4.1e-94 349.0 339 76.1
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.9e-92 342.8 314 76.8
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.9e-91 340.1 334 67.4
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 3.2e-91 339.3 319 71.2
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 2.1e-90 336.7 333 71.2
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 2.7e-90 336.3 322 76.4
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 8.0e-90 334.7 334 71.6
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 2.3e-89 333.2 314 76.8
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.3e-89 333.2 339 73.7
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 5.2e-89 332.0 315 71.1
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 1.5e-88 330.5 330 71.2
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 7.5e-88 328.2 330 73.9
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 2.2e-87 326.6 319 74.3
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 6.3e-87 325.1 314 76.4
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 8.3e-87 324.7 331 73.7
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.4e-86 323.9 339 72.9
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 2.4e-86 323.2 332 73.5
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 4.1e-86 322.4 333 71.5
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 4.1e-86 322.4 321 75.4
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 9.1e-86 321.2 314 67.8
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 4.5e-85 318.9 354 59.6
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 2.2e-84 316.6 332 67.2
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 8.5e-84 314.7 321 71.3
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 8.5e-84 314.7 312 73.4
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-83 314.3 339 71.7
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.9e-83 313.5 316 66.8
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.9e-83 313.5 316 66.8
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.5e-83 313.2 343 72.3
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 4.2e-83 312.4 339 72.3
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 4.2e-83 312.4 333 72.4
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 5.5e-83 312.0 331 72.5
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 9.4e-83 311.2 339 72.3
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 2.7e-82 309.7 330 64.8
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 4.7e-82 308.9 326 71.5
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 4.7e-82 308.9 321 72.6
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.7e-82 308.9 339 71.7
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 4.7e-82 308.9 334 72.5
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 8.0e-82 308.1 339 70.5
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.0e-81 307.8 314 73.2
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.0e-81 307.8 314 73.2
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.4e-81 307.4 340 66.2
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-81 307.4 327 70.3
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-81 306.6 321 72.3
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 3.0e-81 306.2 321 67.0
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 8.8e-81 304.7 313 73.2
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 3.4e-80 302.8 329 71.4
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 9.8e-80 301.2 332 66.3
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.7e-79 300.4 342 65.8
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.2e-79 300.1 334 68.6
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 2.8e-79 299.7 332 70.5
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.1e-78 297.7 315 70.2
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.8e-78 297.0 319 72.1
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 2.4e-78 296.6 315 63.2
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 3.1e-78 296.2 326 69.0
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 7.0e-78 295.0 326 69.6
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 9.1e-78 294.7 315 71.7
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 1.2e-77 294.3 321 62.6
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.2e-77 294.3 314 72.3
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-77 293.9 315 63.5
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 5.9e-77 292.0 315 63.5
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 7.7e-77 291.6 315 71.1
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.0e-76 291.2 329 61.7
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.7e-76 290.4 327 63.6
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 2.3e-76 290.0 329 61.7
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 2.3e-76 290.0 329 62.6
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 2.9e-76 289.7 315 68.9
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 5.0e-76 288.9 315 68.9
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 5.0e-76 288.9 329 61.7
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 5.0e-76 288.9 315 68.9
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 5.0e-76 288.9 332 63.6
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 6.6e-76 288.5 333 63.1
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 2.5e-75 286.6 333 68.5
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 4.2e-75 285.8 314 62.7
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.5e-75 285.4 321 67.0
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 9.5e-75 284.6 315 62.5
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 9.5e-75 284.6 317 62.5
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.8e-74 283.1 303 66.0
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.8e-74 283.1 335 68.7
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 6.1e-74 282.0 329 60.8
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 6.1e-74 282.0 329 60.8
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.4e-73 280.8 320 61.2
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 3.0e-73 279.6 301 72.8
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.2e-72 277.7 257 71.2
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 4.4e-72 275.8 329 67.8
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.3e-71 274.2 315 69.2
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.2e-71 273.5 361 55.7
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.4e-70 270.8 315 65.4
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.7e-69 266.5 296 65.9
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.0e-68 264.6 312 70.8
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 2.3e-68 263.5 299 71.9
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 5.0e-68 262.3 216 72.7
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 6.6e-68 261.9 318 66.7
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.9e-67 260.4 308 71.1
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 7.3e-67 258.5 309 71.2
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 8.0e-66 255.0 313 69.3
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 1.4e-65 254.2 328 58.5
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.2e-64 251.1 293 64.5
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-63 247.3 303 59.7
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.1e-62 244.6 217 61.3
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.9e-62 243.8 309 62.8
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 7.0e-62 241.9 312 59.9
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.2e-61 241.1 297 64.6
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 2.0e-61 240.4 319 57.7
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 4.6e-61 239.2 233 58.8
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 4.4e-56 222.6 218 68.3
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.3e-52 210.3 162 71.6
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.3e-52 210.3 308 54.5
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 9.5e-51 204.9 221 60.6
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 6.2e-50 202.2 319 53.6
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 6.2e-50 202.2 175 72.0
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.4e-49 201.1 330 53.3
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 3.1e-49 199.9 166 69.3
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.2e-48 198.0 157 73.2
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 5.8e-48 195.7 177 58.2
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 7.6e-48 195.3 177 58.2
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 4.9e-47 192.6 313 50.8
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 6.4e-47 192.2 312 58.7
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 9.2e-46 188.3 186 59.1
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 9.2e-46 188.3 329 50.5
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.2e-45 188.0 295 55.9
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.6e-45 187.6 115 87.0
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 7.8e-45 185.3 177 63.8
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 6.6e-44 182.2 218 50.5
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 6.6e-44 182.2 212 79.2
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-43 180.6 186 63.4
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.2e-42 177.9 331 49.8
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.1e-41 174.9 134 68.7
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 2.4e-41 173.7 185 55.1
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.1e-41 173.3 207 79.7
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 5.2e-41 172.6 158 70.9
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 8.9e-41 171.8 152 79.6
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 4.9e-39 166.0 152 59.9
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-37 161.4 157 58.0
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 3.9e-36 156.4 130 64.6
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.9e-35 154.1 146 61.6
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 4.3e-35 152.9 153 61.4
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.5e-32 144.4 183 73.8
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 3.1e-25 120.2 165 50.9
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 7.1e-22 109.0 146 45.9
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.9e-21 105.5 95 61.1
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.7e-20 102.1 95 58.9
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.7e-20 102.1 95 58.9
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-17 94.7 88 59.1
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.4e-17 94.7 351 36.5
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.8e-17 94.4 96 55.2
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 7.1e-14 82.4 96 45.8
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.2e-13 81.6 92 54.3
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.6e-13 79.7 93 51.6
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 6.0e-13 79.3 67 64.2
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 6.7e-12 75.9 102 43.1
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 8.7e-12 75.5 57 66.7
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.2e-08 65.1 61 57.4
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.6e-08 63.9 163 41.7
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 7.6e-08 62.4 79 48.1
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-07 61.6 62 56.5
C05p31220 Brassica napus HOM05D000252 ORTHO05D004664 4.2e-06 56.6 31 83.9


User provided reference genes

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