Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 4.1e-201 704.5 360 100.0
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 1.8e-175 619.4 330 96.7
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 1.3e-122 443.7 346 73.7
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 4.3e-105 385.6 299 72.2
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 3.3e-89 332.8 324 58.6
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 5.2e-87 325.5 237 70.5
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 1.5e-86 323.9 233 70.8
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 2.0e-86 323.6 252 66.7
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 9.9e-86 321.2 287 60.6
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.3e-85 320.9 314 58.3
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 1.3e-85 320.9 245 67.8
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 4.9e-85 318.9 312 57.4
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 6.4e-85 318.5 271 61.3
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 8.4e-85 318.2 272 61.0
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 1.4e-84 317.4 233 69.1
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 2.4e-84 316.6 328 57.6
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 3.2e-84 316.2 229 68.6
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 2.1e-83 313.5 241 66.4
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 2.7e-83 313.2 256 65.6
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 4.6e-83 312.4 233 68.7
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 6.0e-83 312.0 231 68.0
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 6.0e-83 312.0 225 68.4
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 6.0e-83 312.0 227 69.6
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 1.7e-82 310.5 233 68.2
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 2.3e-82 310.1 271 61.3
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 3.0e-82 309.7 215 72.6
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 6.6e-82 308.5 309 57.0
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.1e-81 307.8 257 63.8
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.5e-81 307.4 241 66.4
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 4.3e-81 305.8 241 66.0
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.3e-81 305.8 311 57.6
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.3e-81 305.8 311 57.6
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 9.6e-81 304.7 240 66.7
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.6e-80 303.9 240 66.7
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 1.6e-80 303.9 243 64.6
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 2.1e-80 303.5 297 55.9
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 3.6e-80 302.8 212 71.7
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 8.1e-80 301.6 262 62.2
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 4.0e-79 299.3 332 52.4
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 6.8e-79 298.5 305 55.1
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.6e-78 296.6 325 53.5
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 3.4e-78 296.2 321 53.6
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 7.6e-78 295.0 238 63.4
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 1.7e-77 293.9 231 62.8
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 3.8e-77 292.7 236 61.0
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 8.4e-77 291.6 240 62.5
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 1.4e-76 290.8 309 54.7
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 1.9e-76 290.4 244 62.3
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 2.4e-76 290.0 294 56.1
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 3.2e-76 289.7 301 53.8
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 3.2e-76 289.7 240 62.5
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 5.4e-76 288.9 241 61.0
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 7.1e-76 288.5 211 67.3
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 7.1e-76 288.5 238 61.8
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 2.1e-75 287.0 316 53.8
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 4.6e-75 285.8 302 54.3
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 1.3e-74 284.3 209 68.4
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 1.7e-74 283.9 231 64.5
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.3e-74 283.5 228 63.6
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 3.0e-74 283.1 313 51.4
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.9e-74 282.7 239 60.3
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 3.9e-74 282.7 318 51.3
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 8.7e-74 281.6 196 71.4
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.1e-73 281.2 234 60.7
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 1.9e-73 280.4 295 52.5
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 3.3e-73 279.6 238 60.1
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 5.6e-73 278.9 237 60.8
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.6e-73 278.9 295 51.5
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 9.6e-73 278.1 212 63.7
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 1.3e-72 277.7 286 54.5
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.6e-72 277.3 217 65.9
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 2.8e-72 276.6 228 63.6
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 1.4e-71 274.2 227 61.7
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.4e-71 273.5 226 63.3
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 1.2e-70 271.2 294 53.1
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 5.8e-70 268.9 302 51.0
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 1.7e-69 267.3 298 51.0
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.9e-69 266.5 238 60.1
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 4.9e-69 265.8 298 50.7
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 1.4e-68 264.2 284 50.7
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 9.3e-68 261.5 225 61.8
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.2e-67 261.2 238 59.2
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 3.5e-67 259.6 178 70.8
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 4.6e-67 259.2 256 53.9
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 7.9e-67 258.5 280 51.8
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 1.7e-66 257.3 197 63.5
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 3.9e-66 256.1 187 70.6
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 6.6e-66 255.4 209 60.8
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 1.1e-65 254.6 191 63.4
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 5.6e-65 252.3 212 57.1
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 4.8e-64 249.2 212 61.8
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 8.1e-64 248.4 210 61.4
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 1.4e-63 247.7 197 59.9
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 2.6e-62 243.4 319 43.9
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 2.9e-61 240.0 246 53.3
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.9e-60 237.3 238 55.9
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.2e-60 236.5 155 74.2
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 1.6e-56 224.2 421 38.5
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 1.5e-54 217.6 254 49.6
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.7e-53 214.2 174 64.4
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 1.3e-42 177.9 137 65.7
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 3.9e-42 176.4 177 49.7
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.9e-42 176.4 214 48.6
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 5.1e-42 176.0 220 50.0
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 9.7e-41 171.8 171 52.6
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 4.8e-40 169.5 190 46.3
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 4.2e-36 156.4 213 38.5
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 5.1e-34 149.4 132 56.8
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 8.8e-34 148.7 100 72.0
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.8e-31 141.0 110 63.6
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.2e-30 138.3 190 41.1
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 1.3e-29 134.8 145 51.7
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 7.2e-28 129.0 143 49.7
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 1.8e-26 124.4 201 39.3
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 6.3e-24 115.9 161 42.2
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 2.4e-23 114.0 96 55.2
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 1.1e-20 105.1 78 65.4
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 2.5e-20 104.0 109 52.3
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 1.2e-19 101.7 63 73.0
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 8.0e-19 99.0 101 52.5
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 4.8e-16 89.7 98 51.0
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 2.4e-15 87.4 79 60.8
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 3.4e-09 67.0 63 47.6
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 7.5e-09 65.9 60 58.3
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 4.8e-08 63.2 211 26.5
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 1.6e-06 58.2 215 23.7
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 2.7e-06 57.4 50 56.0


User provided reference genes

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