Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g017830.3 Solanum lycopersicum HOM05D001918 ORTHO05D392953 1.7e-21 105.1 54 100.0
Solyc07g040700.3 Solanum lycopersicum HOM05D001918 ORTHO05D392650 1.4e-12 75.5 43 93.0
Sopen01g013160 Solanum pennellii HOM05D000017 ORTHO05D000308 2.4e-12 74.7 41 92.7
Peaxi162Scf00003g05121 Petunia axillaris HOM05D001918 ORTHO05D001931 4.0e-07 57.4 30 96.7
Sopen10g029000 Solanum pennellii HOM05D001918 ORTHO05D001931 4.0e-07 57.4 30 96.7
Nitab4.5_0000155g0220 Nicotiana tabacum HOM05D001918 ORTHO05D001931 1.2e-06 55.8 29 96.6
Nitab4.5_0002869g0040 Nicotiana tabacum HOM05D001918 ORTHO05D001931 1.2e-06 55.8 29 96.6
Solyc10g078340.2 Solanum lycopersicum HOM05D001918 ORTHO05D001931 1.2e-06 55.8 29 96.6
PGSC0003DMG400007170 Solanum tuberosum HOM05D001918 ORTHO05D001931 1.2e-06 55.8 29 96.6
CiPaw.09G049900 Carya illinoinensis HOM05D001918 ORTHO05D001931 1.5e-06 55.5 32 87.5
Potri.006G035300 Populus trichocarpa HOM05D001918 ORTHO05D001931 1.5e-06 55.5 32 87.5
Dinv13384 Davidia involucrata HOM05D001918 ORTHO05D001931 2.0e-06 55.1 29 93.1
Dinv21487 Davidia involucrata HOM05D001918 ORTHO05D001931 2.0e-06 55.1 29 93.1
Eucgr.K01667 Eucalyptus grandis HOM05D001918 ORTHO05D001931 2.6e-06 54.7 40 75.0
Sabra06G0023600 Salix brachista HOM05D001918 ORTHO05D001931 3.4e-06 54.3 32 84.4
Hma1.2p1_0444F.1_g154080 Hydrangea macrophylla HOM05D001918 ORTHO05D001931 4.4e-06 53.9 29 89.7
Potri.016G033100 Populus trichocarpa HOM05D001918 ORTHO05D001931 4.4e-06 53.9 32 84.4
PGR142G2010 Punica granatum HOM05D001918 ORTHO05D001931 4.4e-06 53.9 29 89.7
Sabra16G0036200 Salix brachista HOM05D001918 ORTHO05D001931 4.4e-06 53.9 32 84.4
CAN.G960.69 Capsicum annuum HOM05D001918 ORTHO05D001931 5.8e-06 53.5 29 93.1
Manes.08G061800 Manihot esculenta HOM05D001918 ORTHO05D001931 5.8e-06 53.5 29 89.7
THA.LOC104800467 Tarenaya hassleriana HOM05D001918 ORTHO05D001931 5.8e-06 53.5 34 76.5
TAR386G0002 Trochodendron aralioides HOM05D001918 ORTHO05D001931 5.8e-06 53.5 29 89.7
vmacro04076 Vaccinium macrocarpon HOM05D001918 ORTHO05D001931 5.8e-06 53.5 34 76.5
Atru.chr3.2841 Acer truncatum HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Actinidia06984 Actinidia chinensis HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Actinidia17966 Actinidia chinensis HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 89.7
Actinidia24473 Actinidia chinensis HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Actinidia37873 Actinidia chinensis HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 89.7
Aqoxy2G00502 Aquilegia oxysepala HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
arahy.Tifrunner.gnm1.ann1.19PDHV Arachis hypogaea HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
arahy.Tifrunner.gnm1.ann1.L6NVF8 Arachis hypogaea HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
CSS0041228 Camellia sinensis var. sinensis HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 89.7
Ca_03899_v3 Cicer arietinum L. HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Ca_06181_v3 Cicer arietinum L. HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Ciclev10015010m.g Citrus clementina HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
COL.COLO4_06630 Corchorus olitorius HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Duzib150G0802 Durio zibethinus HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Duzib168G0969 Durio zibethinus HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
FvH4_3g27660 Fragaria vesca HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
FAN16G1168 Fragaria x ananassa HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Glyma.02G277400 Glycine max HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Glyma.13G120100 Glycine max HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Glyma.20G044200 Glycine max HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Gohir.D05G075600 Gossypium hirsutum HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Gohir.D09G104900 Gossypium hirsutum HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Gorai.006G122700 Gossypium raimondii HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Gorai.009G077000 Gossypium raimondii HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Lj2C406G2 Lonicera japonica HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Lj6g0013688 Lotus japonicus HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Lalb_Chr10g0106091 Lupinus albus HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
MD03G1156800 Malus domestica HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Manes.05G200300 Manihot esculenta HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Phvul.006G016800 Phaseolus vulgaris HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Phvul.008G203500 Phaseolus vulgaris HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Potri.001G272300 Populus trichocarpa HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Prupe.4G270000 Prunus persica HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
RcHm_v2.0_Chr5g0050171 Rosa chinensis HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Sabra16G0167600 Salix brachista HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Hund19078 Selenicereus undatus HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
Thecc.09G253200 Theobroma cacao HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
TWI31G0888 Tripterygium wilfordii HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
TWI75G1710 Tripterygium wilfordii HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
VMungo0540G1010 Vigna mungo HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2
VMungo0647G0773 Vigna mungo HOM05D001918 ORTHO05D001931 9.8e-06 52.8 29 86.2


User provided reference genes

Program Settings