Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g016620.3 Solanum lycopersicum HOM05D000097 ORTHO05D000041 2.3e-75 285.4 140 100.0
PGSC0003DMG400023040 Solanum tuberosum HOM05D000097 ORTHO05D000041 4.3e-53 211.5 121 86.8
Dinv13945 Davidia involucrata HOM05D000097 ORTHO05D000041 9.0e-27 124.0 123 52.0
Sopen05g013970 Solanum pennellii HOM05D000097 ORTHO05D000041 2.0e-26 122.9 63 90.5
Dinv13946 Davidia involucrata HOM05D000097 ORTHO05D000041 5.8e-26 121.3 126 50.8
CSS0041661 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 5.5e-24 114.8 130 47.7
Lsat_1_v5_gn_4_61781 Lactuca sativa HOM05D000097 ORTHO05D000041 5.5e-24 114.8 123 45.5
Dinv20112 Davidia involucrata HOM05D000097 ORTHO05D000041 2.7e-23 112.5 126 47.6
CSS0005780 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 1.0e-22 110.5 134 45.5
CSS0025841 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 3.3e-21 105.5 127 48.0
CiPaw.09G099200 Carya illinoinensis HOM05D000097 ORTHO05D000041 7.4e-21 104.4 121 43.0
Potri.006G281600 Populus trichocarpa HOM05D000097 ORTHO05D000041 7.4e-21 104.4 126 46.0
Potri.011G016300 Populus trichocarpa HOM05D000097 ORTHO05D000041 7.4e-21 104.4 126 46.0
GSVIVG01005100001 Vitis vinifera HOM05D000097 ORTHO05D000041 9.6e-21 104.0 124 45.2
Hma1.2p1_0875F.1_g231350 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.6e-20 103.2 125 48.0
Potri.011G015801 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.6e-20 103.2 126 45.2
CSS0026601 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 2.1e-20 102.8 128 46.1
Ciclev10028400m.g Citrus clementina HOM05D000097 ORTHO05D000041 2.1e-20 102.8 120 45.0
Cfa000150 Carpinus fangiana HOM05D000097 ORTHO05D000041 3.7e-20 102.1 125 43.2
Dinv23670 Davidia involucrata HOM05D000097 ORTHO05D000041 3.7e-20 102.1 121 46.3
Hma1.2p1_0875F.1_g231340 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 3.7e-20 102.1 123 44.7
Potri.006G281800 Populus trichocarpa HOM05D000097 ORTHO05D000041 6.2e-20 101.3 130 43.1
Potri.011G016100 Populus trichocarpa HOM05D000097 ORTHO05D000041 6.2e-20 101.3 125 44.8
Dinv13948 Davidia involucrata HOM05D000097 ORTHO05D000041 8.1e-20 100.9 131 43.5
Haze_06873 Corylus avellana HOM05D000097 ORTHO05D000041 2.4e-19 99.4 124 38.7
DCAR_001142 Daucus carota HOM05D000097 ORTHO05D000041 2.4e-19 99.4 121 40.5
Cfa000149 Carpinus fangiana HOM05D000097 ORTHO05D000041 3.1e-19 99.0 124 37.9
Potri.006G281700 Populus trichocarpa HOM05D000097 ORTHO05D000041 5.3e-19 98.2 126 43.7
Potri.011G016200 Populus trichocarpa HOM05D000097 ORTHO05D000041 5.3e-19 98.2 126 43.7
CiPaw.10G075200 Carya illinoinensis HOM05D000097 ORTHO05D000041 6.9e-19 97.8 121 42.1
Cfa000152 Carpinus fangiana HOM05D000097 ORTHO05D000041 9.0e-19 97.4 124 39.5
QL05p071478 Quercus lobata HOM05D000097 ORTHO05D000041 9.0e-19 97.4 123 39.8
vmacro12236 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 9.0e-19 97.4 127 44.1
vmacro12277 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 9.0e-19 97.4 127 44.9
Rhsim06G0147300 Rhododendron simsii HOM05D000097 ORTHO05D000041 1.2e-18 97.1 129 42.6
Haze_06875 Corylus avellana HOM05D000097 ORTHO05D000041 2.0e-18 96.3 125 39.2
QL05p071436 Quercus lobata HOM05D000097 ORTHO05D000041 2.6e-18 95.9 123 42.3
Cfa000912 Carpinus fangiana HOM05D000097 ORTHO05D000041 7.6e-18 94.4 123 39.8
QL05p070873 Quercus lobata HOM05D000097 ORTHO05D000041 7.6e-18 94.4 126 42.9
QL05p070510 Quercus lobata HOM05D000097 ORTHO05D000041 1.0e-17 94.0 126 42.1
CiPaw.09G099000 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.3e-17 93.6 121 39.7
Manes.15G116900 Manihot esculenta HOM05D000097 ORTHO05D000041 1.3e-17 93.6 122 40.2
QL05p071177 Quercus lobata HOM05D000097 ORTHO05D000041 2.9e-17 92.4 123 38.2
vmacro12278 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 2.9e-17 92.4 124 42.7
GSVIVG01005102001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.8e-17 92.0 103 47.6
Hma1.2p1_1475F.1_g285780 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 6.5e-17 91.3 123 42.3
Lsat_1_v5_gn_7_14780 Lactuca sativa HOM05D000097 ORTHO05D000041 6.5e-17 91.3 120 44.2
Lsat_1_v5_gn_7_14820 Lactuca sativa HOM05D000097 ORTHO05D000041 6.5e-17 91.3 120 44.2
Rhsim06G0147500 Rhododendron simsii HOM05D000097 ORTHO05D000041 6.5e-17 91.3 133 40.6
QL05p070833 Quercus lobata HOM05D000097 ORTHO05D000041 8.4e-17 90.9 126 42.9
Rhsim06G0147800 Rhododendron simsii HOM05D000097 ORTHO05D000041 1.4e-16 90.1 133 40.6
GSVIVG01004413001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.4e-16 90.1 103 46.6
vmacro12272 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 3.2e-16 89.0 129 41.9
Dinv23674 Davidia involucrata HOM05D000097 ORTHO05D000041 4.2e-16 88.6 126 41.3
QL05p070420 Quercus lobata HOM05D000097 ORTHO05D000041 4.2e-16 88.6 131 38.9
Dinv23672 Davidia involucrata HOM05D000097 ORTHO05D000041 5.5e-16 88.2 121 41.3
Dinv20111 Davidia involucrata HOM05D000097 ORTHO05D000041 1.2e-15 87.0 98 45.9
Aqoxy1G02935 Aquilegia oxysepala HOM05D000097 ORTHO05D000041 1.6e-15 86.7 120 40.0
QL05p070681 Quercus lobata HOM05D000097 ORTHO05D000041 2.7e-15 85.9 108 41.7
QL05p071327 Quercus lobata HOM05D000097 ORTHO05D000041 3.5e-15 85.5 125 37.6
AUR62012416 Chenopodium quinoa HOM05D000097 ORTHO05D000041 6.0e-15 84.7 122 37.7
ECA248G1433 Erigeron canadensis HOM05D000097 ORTHO05D000041 7.9e-15 84.3 127 39.4
GSVIVG01006751001 Vitis vinifera HOM05D000097 ORTHO05D000041 7.9e-15 84.3 102 44.1
GSVIVG01028837001 Vitis vinifera HOM05D000097 ORTHO05D000041 7.9e-15 84.3 121 37.2
DCAR_027551 Daucus carota HOM05D000097 ORTHO05D000041 2.3e-14 82.8 121 38.8
AUR62031540 Chenopodium quinoa HOM05D000097 ORTHO05D000041 3.0e-14 82.4 122 36.9
GSVIVG01005660001 Vitis vinifera HOM05D000097 ORTHO05D000041 6.7e-14 81.3 121 36.4
GSVIVG01012264001 Vitis vinifera HOM05D000097 ORTHO05D000041 6.7e-14 81.3 121 34.7
Cfa000147 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.5e-13 80.1 132 32.6
DCAR_009740 Daucus carota HOM05D000097 ORTHO05D000041 1.9e-13 79.7 130 37.7
GSVIVG01012268001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.5e-13 79.3 121 35.5
ECA234G0931 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.3e-13 79.0 120 38.3
Lsat_1_v5_gn_7_14740 Lactuca sativa HOM05D000097 ORTHO05D000041 4.3e-13 78.6 120 39.2
AUR62031539 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.6e-12 76.6 125 34.4
HanXRQChr14g0433251 Helianthus annuus HOM05D000097 ORTHO05D000041 1.6e-12 76.6 121 37.2
Potri.011G015700 Populus trichocarpa HOM05D000097 ORTHO05D000041 2.1e-12 76.3 95 45.3
ECA246G4976 Erigeron canadensis HOM05D000097 ORTHO05D000041 3.7e-12 75.5 120 35.8
Hma1.2p1_1176F.1_g264290 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 3.7e-12 75.5 94 41.5
Haze_05643 Corylus avellana HOM05D000097 ORTHO05D000041 8.2e-12 74.3 87 43.7
Cfa000145 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.1e-11 73.9 121 38.8
HanXRQChr17g0558911 Helianthus annuus HOM05D000097 ORTHO05D000041 2.4e-11 72.8 122 33.6
QL05p070490 Quercus lobata HOM05D000097 ORTHO05D000041 2.4e-11 72.8 113 35.4
DCAR_009741 Daucus carota HOM05D000097 ORTHO05D000041 3.1e-11 72.4 125 36.8
Dinv23673 Davidia involucrata HOM05D000097 ORTHO05D000041 3.1e-11 72.4 136 32.4
Haze_06880 Corylus avellana HOM05D000097 ORTHO05D000041 6.9e-11 71.2 121 38.8
GSVIVG01005109001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.2e-10 70.5 88 42.0
Haze_06869 Corylus avellana HOM05D000097 ORTHO05D000041 2.0e-10 69.7 123 34.1
Actinidia26888 Actinidia chinensis HOM05D064754 ORTHO05D000041 2.6e-10 69.3 72 51.4
Haze_06865 Corylus avellana HOM05D000097 ORTHO05D000041 4.5e-10 68.6 83 42.2
ATR0736G044 Amborella trichopoda HOM05D000097 ORTHO05D009673 5.9e-10 68.2 118 33.1
GSVIVG01002750001 Vitis vinifera HOM05D000097 ORTHO05D000041 5.9e-10 68.2 95 37.9
Ah.16g104570 Amaranthus hybridus HOM05D000097 ORTHO05D000041 7.6e-10 67.8 105 31.4
HanXRQChr17g0558921 Helianthus annuus HOM05D000097 ORTHO05D000041 7.6e-10 67.8 124 35.5
Ciclev10030399m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.0e-09 67.4 98 36.7
Dinv23668 Davidia involucrata HOM05D000097 ORTHO05D000041 1.3e-09 67.0 99 36.4
Glyma.15G086800 Glycine max HOM05D000097 ORTHO05D000041 1.7e-09 66.6 128 32.8
Actinidia38166 Actinidia chinensis HOM05D000097 ORTHO05D009673 2.9e-09 65.9 119 31.9
Dinv13944 Davidia involucrata HOM05D000097 ORTHO05D000041 2.9e-09 65.9 63 50.8
Lalb_Chr20g0118221 Lupinus albus HOM05D000097 ORTHO05D000041 2.9e-09 65.9 119 36.1
Rhsim06G0042700 Rhododendron simsii HOM05D010878 ORTHO05D009673 3.8e-09 65.5 119 33.6
Duzib235G0681 Durio zibethinus HOM05D000097 ORTHO05D000041 5.0e-09 65.1 134 32.8
Rhsim05G0188900 Rhododendron simsii HOM05D000097 ORTHO05D009673 6.5e-09 64.7 119 32.8
Atru.chr1.985 Acer truncatum HOM05D000097 ORTHO05D000041 8.5e-09 64.3 123 34.1
Cc11_g06180 Coffea canephora HOM05D000097 ORTHO05D009673 8.5e-09 64.3 119 36.1
Peaxi162Scf00312g00612 Petunia axillaris HOM05D000097 ORTHO05D009673 1.1e-08 63.9 118 34.7
VMungo0540G0336 Vigna mungo HOM05D000097 ORTHO05D000041 1.1e-08 63.9 120 36.7
Actinidia02344 Actinidia chinensis HOM05D000097 ORTHO05D000041 1.4e-08 63.5 71 47.9
AUR62031538 Chenopodium quinoa HOM05D000097 ORTHO05D000041 1.9e-08 63.2 122 29.5
CiPaw.09G099400 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.5e-08 62.8 127 37.0
Duzib235G1060 Durio zibethinus HOM05D000097 ORTHO05D000041 4.2e-08 62.0 136 32.4
FvH4_3g01330 Fragaria vesca HOM05D000097 ORTHO05D000041 5.5e-08 61.6 133 33.1
CiPaw.08G151500 Carya illinoinensis HOM05D000097 ORTHO05D000041 7.2e-08 61.2 119 33.6
Ca_00479_v3 Cicer arietinum L. HOM05D000097 ORTHO05D000041 9.3e-08 60.8 127 31.5
Medtr2g020450 Medicago truncatula HOM05D000097 ORTHO05D000041 9.3e-08 60.8 125 34.4
Thecc.06G229100 Theobroma cacao HOM05D000097 ORTHO05D000041 9.3e-08 60.8 136 28.7
Atru.chr1.1016 Acer truncatum HOM05D000097 ORTHO05D000041 1.2e-07 60.5 123 32.5
CiPaw.09G099300 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.2e-07 60.5 91 33.0
Dinv05551 Davidia involucrata HOM05D000097 ORTHO05D000041 1.6e-07 60.1 120 31.7
FAN21G1014 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.6e-07 60.1 131 33.6
Medtr2g020470 Medicago truncatula HOM05D000097 ORTHO05D000041 2.1e-07 59.7 120 35.8
CSS0026496 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D009673 3.6e-07 58.9 119 29.4
Gorai.010G184500 Gossypium raimondii HOM05D000097 ORTHO05D000041 3.6e-07 58.9 123 29.3
VMungo0540G1282 Vigna mungo HOM05D000097 ORTHO05D000041 3.6e-07 58.9 120 32.5
Duzib268G1646 Durio zibethinus HOM05D000097 ORTHO05D000041 4.6e-07 58.5 119 31.9
Phvul.006G160200 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 4.6e-07 58.5 119 33.6
TPR.G1508 Trifolium pratense HOM05D000097 ORTHO05D000041 4.6e-07 58.5 120 34.2
FAN25G3460 Fragaria x ananassa HOM05D001218 ORTHO05D003142 6.1e-07 58.2 128 32.0
TAR633G2122 Trochodendron aralioides HOM05D000097 ORTHO05D000041 6.1e-07 58.2 123 30.9
Atru.chr10.2319 Acer truncatum HOM05D000097 ORTHO05D000041 7.9e-07 57.8 122 30.3
EL10Ac3g06766 Beta vulgaris HOM05D000097 ORTHO05D000041 1.0e-06 57.4 123 26.8
Medtr2g020510 Medicago truncatula HOM05D000097 ORTHO05D000041 1.0e-06 57.4 119 33.6
Gohir.D06G158100 Gossypium hirsutum HOM05D000097 ORTHO05D000041 2.3e-06 56.2 133 28.6
Psat1g186680 Pisum sativum HOM05D000097 ORTHO05D000041 2.3e-06 56.2 119 33.6
PSO017G1497 Papaver somniferum HOM05D000097 ORTHO05D009673 3.0e-06 55.8 130 30.8
Gohir.A10G010700 Gossypium hirsutum HOM05D000097 ORTHO05D000041 3.9e-06 55.5 130 28.5
QL12p041792 Quercus lobata HOM05D000097 ORTHO05D000041 3.9e-06 55.5 120 33.3
Gohir.D06G158000 Gossypium hirsutum HOM05D000097 ORTHO05D000041 6.7e-06 54.7 135 28.9
Gorai.010G184600 Gossypium raimondii HOM05D000097 ORTHO05D000041 6.7e-06 54.7 133 27.8
PSO063G5786 Papaver somniferum HOM05D000097 ORTHO05D009673 6.7e-06 54.7 130 31.5
Atru.chr10.2318 Acer truncatum HOM05D000097 ORTHO05D000041 8.7e-06 54.3 123 30.9
CSS0014543 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D009673 8.7e-06 54.3 117 28.2
Ciclev10004436m.g Citrus clementina HOM05D000097 ORTHO05D000041 8.7e-06 54.3 119 31.1
PGR142G2411 Punica granatum HOM05D000097 ORTHO05D000041 8.7e-06 54.3 120 31.7


User provided reference genes

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