Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1258.8 652 100.0
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 1214.1 643 97.0
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 6.4e-285 983.8 632 77.8
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.4e-284 980.7 604 83.8
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.3e-282 976.1 589 85.4
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 3.9e-282 974.5 625 77.1
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 3.9e-282 974.5 625 77.1
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 3.5e-275 951.4 641 75.2
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 8.1e-272 940.3 625 75.7
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 1.5e-270 936.0 641 72.5
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 2.4e-268 928.7 634 73.3
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 3.5e-267 924.9 616 74.4
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 8.7e-266 920.2 618 72.7
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 2.5e-265 918.7 615 74.1
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.3e-264 916.4 625 73.0
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 3.7e-264 914.8 626 72.5
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 8.1e-264 913.7 615 73.3
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 8.1e-264 913.7 615 73.7
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 9.0e-263 910.2 617 74.1
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 4.5e-262 907.9 646 68.9
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 1.7e-261 906.0 622 73.3
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 1.7e-261 906.0 632 72.0
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 2.2e-261 905.6 615 72.8
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 4.9e-261 904.4 648 69.8
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 4.9e-261 904.4 617 74.1
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 8.4e-261 903.7 625 71.4
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 3.2e-260 901.7 615 72.5
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 2.7e-259 898.7 614 73.6
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 1.0e-258 896.7 631 70.8
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 3.9e-258 894.8 620 70.2
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 6.7e-258 894.0 615 71.1
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 9.6e-257 890.2 620 71.1
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 1.3e-256 889.8 615 71.9
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 3.7e-256 888.3 615 71.9
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 4.8e-256 887.9 620 69.5
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 5.3e-255 884.4 634 69.2
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 5.3e-255 884.4 617 72.4
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 6.9e-255 884.0 620 69.4
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 1.5e-254 882.9 618 70.1
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 1.0e-253 880.2 620 71.3
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 6.5e-253 877.5 631 69.6
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 4.2e-252 874.8 610 70.3
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 2.7e-251 872.1 617 71.3
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 7.9e-251 870.5 619 69.6
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 1.0e-250 870.2 624 69.6
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 1.3e-250 869.8 617 69.9
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 5.1e-250 867.8 623 69.7
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 2.5e-249 865.5 632 69.1
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 1.6e-248 862.8 621 68.1
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 1.8e-247 859.4 639 70.1
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 2.4e-247 859.0 619 71.9
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 4.1e-247 858.2 622 68.6
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 1.0e-245 853.6 628 67.5
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 2.2e-245 852.4 628 67.5
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 8.8e-242 840.5 619 69.6
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 1.3e-240 836.6 630 67.5
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 4.8e-240 834.7 623 68.1
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.0e-238 829.3 581 71.3
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 1.1e-236 823.5 635 65.0
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 4.2e-236 821.6 511 82.2
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 5.5e-236 821.2 630 66.0
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 7.9e-235 817.4 623 66.0
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 8.8e-234 813.9 630 65.6
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 1.3e-229 800.0 650 63.7
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 1.9e-228 796.2 650 64.5
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 2.5e-228 795.8 614 65.3
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 1.2e-227 793.5 659 64.3
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 1.2e-227 793.5 629 67.1
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 3.6e-227 792.0 721 58.0
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 3.3e-225 785.4 648 63.0
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 4.4e-225 785.0 594 67.8
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 3.7e-224 781.9 627 67.0
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 1.2e-219 766.9 616 64.4
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 8.0e-219 764.2 592 68.1
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 6.8e-218 761.1 631 63.1
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 5.7e-217 758.1 642 59.3
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 2.2e-216 756.1 622 64.1
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 3.7e-216 755.4 643 59.7
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 8.3e-216 754.2 629 61.4
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 1.0e-213 747.3 618 61.0
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 5.0e-213 745.0 617 63.5
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 6.5e-213 744.6 617 63.5
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 8.5e-213 744.2 617 62.1
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 1.1e-212 743.8 619 60.7
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 1.2e-211 740.3 617 61.8
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 4.0e-210 735.3 618 61.7
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 2.6e-209 732.6 621 62.2
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 3.7e-208 728.8 617 62.1
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 9.1e-207 724.2 618 61.7
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 5.9e-206 721.5 458 76.4
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 3.8e-205 718.8 458 76.0
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 1.9e-204 716.5 623 61.3
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 7.2e-204 714.5 623 61.2
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 1.4e-199 700.3 583 64.2
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 2.8e-195 686.0 618 59.4
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.8e-195 686.0 497 71.8
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 3.6e-195 685.6 612 57.8
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 4.7e-195 685.3 618 59.4
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 5.2e-194 681.8 423 76.6
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.4e-186 657.1 638 53.8
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.0e-185 653.3 645 52.6
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 7.8e-174 614.8 495 63.4
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.7e-173 613.6 513 62.8
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 1.5e-161 573.9 463 64.4
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 6.6e-157 558.5 413 69.0
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.5e-150 536.2 486 56.0
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 3.9e-133 479.6 643 41.5
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 8.2e-131 471.9 558 50.2
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 2.9e-120 436.8 642 39.9
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.8e-114 417.5 387 55.8
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 5.9e-105 386.0 221 82.4
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 1.5e-100 371.3 643 39.0
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 5.7e-100 369.4 625 37.6
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.7e-91 340.1 250 65.6
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.2e-67 261.2 151 84.8
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.9e-66 258.1 143 83.9
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 8.6e-56 222.6 129 82.9
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.4e-45 188.7 97 92.8
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 3.3e-23 114.4 108 52.8
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 5.7e-23 113.6 108 51.9
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 8.7e-16 89.7 108 47.2
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.9e-15 88.6 56 64.3
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 6.3e-06 57.0 170 32.9


User provided reference genes

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