Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 1.4e-195 686.0 337 100.0
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 4.2e-195 684.5 337 99.7
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 3.9e-193 677.9 337 98.8
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.4e-174 616.3 344 88.7
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 6.9e-174 614.0 346 87.6
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 5.7e-152 541.2 353 78.5
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 1.7e-151 539.7 346 78.9
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 2.8e-151 538.9 317 84.9
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 1.8e-150 536.2 341 78.3
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 1.2e-149 533.5 348 76.7
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 4.5e-149 531.6 338 79.3
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 5.9e-149 531.2 347 76.1
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 7.9e-146 520.8 338 77.8
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 1.4e-145 520.0 342 78.1
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 3.0e-145 518.8 350 73.1
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.5e-144 516.5 342 74.9
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 4.4e-144 515.0 348 75.0
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 4.1e-142 508.4 356 72.2
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 7.7e-141 504.2 349 71.3
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 7.7e-141 504.2 373 70.0
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 1.0e-140 503.8 343 71.7
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 6.5e-140 501.1 345 72.2
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 1.1e-139 500.4 358 70.9
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.9e-139 499.6 351 70.9
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 7.2e-139 497.7 358 70.4
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 9.4e-139 497.3 342 73.1
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 1.2e-138 496.9 358 70.9
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 3.6e-138 495.4 349 69.9
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 1.8e-137 493.0 349 70.2
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 6.7e-137 491.1 359 70.5
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 8.8e-137 490.7 352 68.8
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.5e-136 490.0 352 68.8
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 2.6e-136 489.2 352 69.6
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 4.4e-136 488.4 352 69.9
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 5.7e-136 488.0 344 73.5
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 7.4e-136 487.6 360 70.8
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 9.7e-136 487.3 353 69.1
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 9.7e-136 487.3 353 69.1
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 9.7e-136 487.3 365 68.2
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 9.7e-136 487.3 351 71.8
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.3e-135 486.9 362 69.9
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 1.3e-135 486.9 355 69.3
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 1.7e-135 486.5 354 69.5
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.2e-135 486.1 348 69.5
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 2.2e-135 486.1 353 70.3
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 2.2e-135 486.1 367 66.8
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 2.8e-135 485.7 355 69.0
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 3.7e-135 485.3 356 68.8
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 6.3e-135 484.6 353 70.0
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 1.4e-134 483.4 359 68.5
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 1.4e-134 483.4 354 70.1
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 1.8e-134 483.0 358 68.4
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 1.8e-134 483.0 348 69.3
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 2.4e-134 482.6 348 69.5
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 2.4e-134 482.6 350 69.4
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 3.1e-134 482.3 356 68.3
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 3.1e-134 482.3 348 69.0
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 4.1e-134 481.9 352 68.8
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 5.3e-134 481.5 357 68.9
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 1.6e-133 479.9 356 67.7
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 2.0e-133 479.6 351 70.9
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 3.5e-133 478.8 357 68.6
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 3.5e-133 478.8 357 68.6
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 4.5e-133 478.4 356 67.7
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 5.9e-133 478.0 351 69.8
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 5.9e-133 478.0 348 69.8
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 1.0e-132 477.2 357 67.8
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 1.0e-132 477.2 363 69.1
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 2.9e-132 475.7 349 67.3
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 3.8e-132 475.3 363 67.8
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 6.5e-132 474.6 363 67.5
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 8.5e-132 474.2 321 74.5
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 1.1e-131 473.8 353 68.6
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 1.9e-131 473.0 353 69.7
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 2.5e-131 472.6 362 68.2
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 2.5e-131 472.6 362 68.2
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 7.2e-131 471.1 359 68.0
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 9.4e-131 470.7 356 67.1
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 9.4e-131 470.7 361 67.9
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 2.7e-130 469.2 363 67.2
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 4.7e-130 468.4 376 67.3
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 4.7e-130 468.4 376 67.3
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 2.3e-129 466.1 351 68.1
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 8.8e-129 464.2 359 66.0
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.2e-127 459.5 351 67.0
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 6.3e-127 458.0 374 64.4
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 8.3e-127 457.6 342 67.0
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 2.4e-126 456.1 348 67.2
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 5.4e-126 454.9 352 66.5
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 7.7e-125 451.1 351 66.4
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 1.0e-124 450.7 353 64.9
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 6.5e-124 448.0 360 64.4
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 2.5e-123 446.0 436 56.9
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 2.1e-122 443.0 358 64.5
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 4.0e-121 438.7 347 63.1
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 1.2e-120 437.2 357 64.1
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 2.6e-120 436.0 360 63.3
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.7e-119 433.3 347 62.5
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 1.8e-118 429.9 332 67.8
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 2.9e-116 422.5 362 62.2
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 2.5e-115 419.5 322 68.6
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 3.3e-115 419.1 332 64.8
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 9.5e-115 417.5 344 62.5
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 2.8e-114 416.0 325 66.5
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 4.4e-112 408.7 349 59.0
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 9.2e-110 401.0 342 59.6
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.0e-108 397.5 350 59.1
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.2e-106 390.6 296 65.2
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.2e-106 390.6 299 63.2
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 2.9e-103 379.4 281 70.5
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.1e-102 377.5 320 62.5
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 7.8e-101 371.3 284 68.0
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 8.6e-100 367.9 287 68.3
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 4.3e-99 365.5 348 57.5
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 9.5e-99 364.4 228 78.5
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 2.3e-97 359.8 194 87.6
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 6.8e-97 358.2 346 55.5
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 8.9e-97 357.8 350 56.0
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 2.0e-96 356.7 194 87.1
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 4.4e-96 355.5 334 56.6
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 8.3e-95 351.3 194 86.1
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 3.2e-94 349.4 296 58.4
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 2.7e-93 346.3 313 57.8
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 7.8e-93 344.7 328 54.0
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 3.6e-90 335.9 295 54.9
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 2.4e-70 270.0 153 82.4
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 4.2e-62 242.7 202 62.4
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 3.5e-61 239.6 200 62.0
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.5e-59 233.4 126 84.9
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 9.0e-57 224.9 175 69.1
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 4.6e-45 186.0 332 39.8
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 9.7e-43 178.3 100 82.0
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.4e-36 157.9 153 56.9
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 3.7e-34 149.8 138 58.7
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.0e-32 144.1 101 75.2
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 1.2e-29 134.8 88 72.7
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.4e-28 131.3 154 50.6
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 2.0e-27 127.5 73 76.7
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 3.3e-27 126.7 73 76.7
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 2.4e-25 120.6 227 39.6
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 2.9e-15 87.0 118 40.7
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 2.7e-13 80.5 44 81.8
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 6.5e-07 59.3 71 50.7


User provided reference genes

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