Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 1.7e-106 389.4 203 100.0
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 4.4e-99 364.8 204 93.6
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 2.2e-90 335.9 210 87.6
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.7e-66 256.5 212 69.8
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 7.1e-65 251.1 210 68.6
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 3.8e-58 228.8 224 59.8
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 2.8e-45 186.0 159 67.3
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 6.7e-31 138.3 220 42.3
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 3.7e-29 132.5 205 42.4
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 1.0e-26 124.4 220 40.0
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 1.7e-26 123.6 216 38.0
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 5.0e-26 122.1 150 45.3
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.4e-25 120.6 214 36.4
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 7.2e-25 118.2 216 37.0
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 7.2e-25 118.2 216 38.9
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 9.3e-25 117.9 199 39.2
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 1.2e-24 117.5 207 38.6
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 1.6e-24 117.1 208 39.9
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 2.1e-24 116.7 211 38.4
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 1.0e-23 114.4 217 37.3
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.0e-23 114.4 208 38.5
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 1.3e-23 114.0 224 38.4
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.8e-23 113.6 198 35.9
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.1e-22 110.9 211 36.0
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 1.5e-22 110.5 222 38.3
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 1.6e-21 107.1 171 38.6
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 2.8e-21 106.3 211 35.5
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 3.7e-21 105.9 116 47.4
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 3.7e-21 105.9 116 47.4
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 3.7e-21 105.9 207 35.7
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 3.7e-21 105.9 195 36.4
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 4.8e-21 105.5 204 37.3
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 8.2e-21 104.8 204 35.8
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 1.4e-20 104.0 209 37.3
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 1.4e-20 104.0 202 34.2
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 2.4e-20 103.2 199 36.7
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 2.4e-20 103.2 214 36.4
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 2.4e-20 103.2 214 35.5
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 5.3e-20 102.1 181 38.7
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 6.9e-20 101.7 206 36.9
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 6.9e-20 101.7 201 35.3
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 9.0e-20 101.3 214 36.0
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.5e-19 100.5 209 36.4
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.5e-19 100.5 201 35.3
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 2.0e-19 100.1 113 49.6
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 2.0e-19 100.1 213 31.9
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.0e-19 100.1 177 40.1
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 3.4e-19 99.4 116 47.4
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 4.5e-19 99.0 161 37.3
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 1.0e-18 97.8 200 36.0
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.3e-18 97.4 206 33.5
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 1.3e-18 97.4 162 35.8
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 1.3e-18 97.4 188 38.8
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 1.3e-18 97.4 134 40.3
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 1.9e-17 93.6 219 34.2
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 3.2e-17 92.8 217 37.3
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 5.5e-17 92.0 200 35.5
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 7.2e-17 91.7 166 39.8
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 1.2e-16 90.9 172 34.3
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 4.6e-16 89.0 215 31.6
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 4.6e-16 89.0 218 36.7
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 7.9e-16 88.2 135 39.3
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 7.9e-16 88.2 208 33.7
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 2.3e-15 86.7 217 33.2
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 2.3e-15 86.7 207 36.7
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 3.9e-15 85.9 233 31.8
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 3.9e-15 85.9 154 36.4
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 5.1e-15 85.5 125 39.2
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 6.7e-15 85.1 176 35.8
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 8.8e-15 84.7 201 35.8
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 1.1e-14 84.3 200 33.5
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.1e-14 84.3 202 35.6
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 1.5e-14 84.0 211 36.0
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 2.0e-14 83.6 205 33.7
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 2.5e-14 83.2 171 36.3
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 2.5e-14 83.2 202 34.2
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.3e-14 82.8 201 35.8
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 5.7e-14 82.0 127 40.9
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 2.2e-13 80.1 105 41.9
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 2.2e-13 80.1 165 34.5
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 3.7e-13 79.3 197 33.0
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 8.2e-13 78.2 212 31.6
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 1.4e-12 77.4 195 32.8
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 1.8e-12 77.0 195 32.8
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 6.9e-12 75.1 213 31.9
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 6.9e-12 75.1 247 28.7
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 6.9e-12 75.1 97 44.3
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 1.2e-11 74.3 217 30.4
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 1.2e-11 74.3 142 38.0
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 1.5e-11 73.9 213 31.0
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 1.5e-11 73.9 140 36.4
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 3.4e-11 72.8 213 31.5
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 4.5e-11 72.4 64 56.2
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 7.7e-11 71.6 199 30.7
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 7.7e-11 71.6 198 30.8
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 1.0e-10 71.2 181 31.5
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 1.0e-10 71.2 177 30.5
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 1.0e-10 71.2 177 30.5
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 1.3e-10 70.9 211 31.8
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 1.3e-10 70.9 216 30.6
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.2e-10 70.1 97 44.3
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 1.9e-09 67.0 161 31.7
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 1.9e-09 67.0 178 30.9
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 2.5e-09 66.6 198 28.8
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 5.5e-09 65.5 169 32.0
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 7.2e-09 65.1 194 29.4
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 3.6e-08 62.8 215 31.2
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 7.9e-08 61.6 207 30.0
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.0e-07 61.2 126 33.3
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 1.4e-07 60.8 199 28.6
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 2.0e-06 57.0 204 28.4


User provided reference genes

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