Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 5.7e-145 517.7 286 100.0
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 3.2e-140 501.9 280 99.6
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.7e-139 498.8 280 98.6
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 9.8e-129 463.8 288 91.7
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.7e-128 463.0 281 92.2
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.5e-124 449.1 282 90.1
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 7.8e-118 427.6 281 84.0
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 5.8e-113 411.4 281 82.2
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.2e-110 403.7 284 80.3
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.2e-110 403.7 281 81.9
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.0e-110 402.9 283 80.6
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 4.6e-110 401.7 284 78.9
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.8e-110 401.0 284 78.5
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 6.6e-109 397.9 283 80.2
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 1.5e-108 396.7 284 78.5
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.5e-108 396.0 282 78.7
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.3e-108 395.2 283 78.8
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 5.6e-108 394.8 283 77.4
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 9.5e-108 394.0 282 79.1
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 9.5e-108 394.0 286 77.3
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.1e-107 392.9 283 80.2
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.8e-107 392.5 233 79.0
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 2.8e-107 392.5 281 77.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 3.6e-107 392.1 282 78.0
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 6.2e-107 391.3 283 78.8
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.1e-106 390.6 282 77.0
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.8e-106 389.8 281 77.6
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 3.1e-106 389.0 284 78.9
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 3.1e-106 389.0 284 78.9
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 3.1e-106 389.0 281 78.6
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 4.0e-106 388.7 282 76.6
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.8e-106 387.9 285 77.9
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 1.5e-105 386.7 284 78.2
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 2.0e-105 386.3 284 77.5
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 4.4e-105 385.2 282 77.7
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 7.5e-105 384.4 285 77.9
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 6.4e-104 381.3 284 76.4
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 8.3e-104 380.9 306 72.9
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.1e-103 380.6 283 76.0
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 5.4e-103 378.3 282 77.7
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 9.2e-103 377.5 285 76.1
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.2e-102 377.1 284 76.1
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.2e-102 377.1 284 75.7
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.2e-102 377.1 283 75.6
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.6e-102 376.7 283 75.6
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.7e-102 375.9 285 76.8
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.7e-102 375.9 284 77.5
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.7e-102 375.9 219 80.4
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.5e-102 375.6 283 74.6
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.3e-101 372.9 283 73.9
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.3e-101 372.9 284 74.3
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 3.9e-101 372.1 294 73.1
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 5.1e-101 371.7 284 75.7
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.1e-100 370.5 283 76.7
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 3.3e-100 369.0 286 76.9
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.3e-100 369.0 282 75.5
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.2e-99 367.1 283 74.9
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.2e-99 367.1 284 75.0
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 2.8e-99 365.9 231 72.7
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.8e-99 365.9 284 74.3
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 6.2e-99 364.8 283 74.6
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 8.1e-99 364.4 283 75.3
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 3.1e-98 362.5 283 73.9
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 5.2e-98 361.7 283 75.6
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 8.9e-98 360.9 266 77.1
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 2.6e-97 359.4 227 74.9
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.3e-96 357.1 280 73.6
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.3e-96 357.1 284 70.4
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.7e-96 356.7 285 74.4
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 2.9e-96 355.9 284 72.5
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 2.9e-96 355.9 225 73.8
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 4.9e-96 355.1 283 71.7
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 6.4e-96 354.8 234 73.9
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.1e-95 354.0 282 73.4
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.4e-95 353.6 226 73.9
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 4.1e-95 352.1 225 73.3
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.2e-94 350.5 209 78.5
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 1.6e-94 350.1 225 72.9
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.6e-94 350.1 225 72.9
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.6e-94 350.1 284 73.6
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.6e-94 350.1 338 63.6
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 2.1e-94 349.7 222 73.9
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 6.0e-94 348.2 284 72.5
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.7e-93 346.7 317 67.5
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.7e-93 346.7 284 69.7
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 2.3e-93 346.3 230 70.4
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 2.3e-93 346.3 281 71.2
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.3e-93 346.3 227 89.4
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 3.0e-93 345.9 231 70.1
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 6.6e-93 344.7 239 70.3
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 8.6e-93 344.4 284 69.7
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.1e-92 344.0 223 72.2
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.9e-92 343.2 239 69.9
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.9e-92 343.2 208 78.4
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 5.6e-92 341.7 268 75.7
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.1e-90 337.4 235 71.5
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.4e-90 336.3 284 69.0
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.1e-90 335.9 254 66.1
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 4.0e-90 335.5 283 69.3
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 8.9e-90 334.3 227 71.4
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 8.9e-90 334.3 231 69.3
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 1.7e-88 330.1 228 70.2
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 2.9e-88 329.3 283 70.0
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.1e-87 327.4 228 69.7
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.9e-87 326.6 280 70.4
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 3.0e-85 319.3 228 70.2
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 1.9e-84 316.6 227 69.2
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 2.5e-84 316.2 229 69.9
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 3.3e-84 315.8 228 69.7
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.3e-84 315.5 219 68.5
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 4.3e-84 315.5 231 67.1
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 2.1e-83 313.2 225 68.9
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.8e-83 312.8 228 69.7
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.8e-82 310.1 241 68.9
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 2.0e-81 306.6 222 67.6
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.9e-79 300.1 225 67.6
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.4e-79 299.7 227 77.5
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 7.1e-79 298.1 285 68.4
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 8.7e-77 291.2 231 75.3
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.6e-76 288.5 243 73.3
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 2.4e-74 283.1 281 65.8
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.5e-73 280.4 192 71.9
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 1.5e-73 280.4 284 62.3
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 3.0e-69 266.2 194 69.1
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 5.6e-68 261.9 239 57.3
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.8e-66 256.9 235 60.9
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.3e-66 255.4 237 59.9
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.3e-64 250.8 208 62.5
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 6.7e-61 238.4 230 54.8
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 4.5e-57 225.7 196 58.7
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.0e-56 224.6 230 52.6
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 3.9e-45 186.0 241 60.6
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 6.7e-45 185.3 145 62.1
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.4e-42 177.6 128 68.0
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.7e-38 163.3 231 41.6
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 2.0e-36 157.1 241 42.3
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 9.1e-34 148.3 244 38.1
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 2.9e-32 143.3 233 39.5
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 9.7e-28 128.3 227 38.8
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.7e-27 127.5 226 38.9
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 2.8e-27 126.7 222 39.2
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 8.2e-27 125.2 138 52.9
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.1e-26 124.8 233 36.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.4e-26 124.4 235 38.3
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.1e-26 123.2 226 38.5
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.5e-25 119.4 227 36.6
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 5.9e-25 119.0 227 34.8
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.0e-24 118.2 234 37.6
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.7e-24 117.5 53 100.0
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 8.5e-24 115.2 224 37.1
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 2.5e-23 113.6 220 35.5
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.6e-22 110.9 247 33.6
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.7e-22 110.2 224 36.2
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.4e-21 107.8 220 35.0
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.8e-21 107.5 261 33.7
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.3e-21 107.1 232 34.5
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.7e-19 100.9 208 36.1
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 4.1e-18 96.3 207 33.8
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 3.5e-17 93.2 54 75.9
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.5e-17 92.8 57 75.4
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 2.1e-14 84.0 48 72.9
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.6e-14 83.2 244 31.1
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.8e-13 80.9 186 36.0
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 5.2e-13 79.3 225 31.1
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 6.8e-13 79.0 183 33.3
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.2e-12 78.2 105 43.8
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.2e-12 78.2 161 36.6
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 1.7e-11 74.3 162 33.3
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.3e-08 64.7 50 54.0
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.7e-08 64.3 159 31.4
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.7e-08 64.3 246 25.6
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 5.0e-08 62.8 34 70.6
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 3.3e-07 60.1 166 30.1
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 4.3e-07 59.7 58 46.6
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 5.6e-07 59.3 64 43.8
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.1e-06 57.4 51 49.0


User provided reference genes

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