Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 2.2e-70 268.9 136 100.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 8.1e-57 223.8 120 96.7
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 9.6e-50 200.3 120 85.0
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.5e-47 193.0 121 83.5
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 2.4e-45 185.7 144 70.1
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 8.4e-30 134.0 127 55.9
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 4.2e-29 131.7 125 57.6
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 4.2e-29 131.7 124 56.5
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 1.2e-28 130.2 123 56.9
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 1.2e-28 130.2 123 56.9
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.7e-28 129.0 125 54.4
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 7.9e-28 127.5 124 54.8
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 1.0e-27 127.1 125 54.4
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 2.3e-27 125.9 125 56.8
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 3.0e-27 125.6 122 54.9
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 3.0e-27 125.6 124 54.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 3.9e-27 125.2 126 54.0
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 5.1e-27 124.8 125 52.8
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 5.1e-27 124.8 125 52.0
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 5.1e-27 124.8 123 54.5
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 3.3e-26 122.1 125 56.0
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.3e-26 122.1 124 54.8
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 4.3e-26 121.7 125 52.8
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 9.7e-26 120.6 125 51.2
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 3.7e-25 118.6 128 50.8
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 3.7e-25 118.6 125 50.4
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 4.8e-25 118.2 122 51.6
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 1.8e-24 116.3 124 51.6
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 3.1e-24 115.5 126 50.0
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 5.3e-24 114.8 126 54.0
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 2.0e-23 112.8 122 53.3
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 2.0e-23 112.8 97 57.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 3.4e-23 112.1 124 50.8
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 3.4e-23 112.1 123 51.2
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 7.6e-23 110.9 123 49.6
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 7.6e-23 110.9 128 48.4
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 1.0e-22 110.5 126 47.6
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 1.0e-22 110.5 124 50.0
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 1.3e-22 110.2 126 48.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 1.3e-22 110.2 126 49.2
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 1.7e-22 109.8 119 43.7
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 1.7e-22 109.8 126 48.4
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 2.2e-22 109.4 81 69.1
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 2.9e-22 109.0 127 50.4
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 3.8e-22 108.6 143 47.6
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 5.0e-22 108.2 124 46.8
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 8.5e-22 107.5 126 53.2
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 8.5e-22 107.5 126 47.6
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.4e-21 106.7 119 49.6
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 2.5e-21 105.9 126 48.4
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 3.2e-21 105.5 130 47.7
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 3.2e-21 105.5 130 48.5
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 3.2e-21 105.5 125 46.4
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 5.5e-21 104.8 122 50.0
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 7.2e-21 104.4 123 50.4
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 9.4e-21 104.0 123 52.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 9.4e-21 104.0 137 47.4
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 9.4e-21 104.0 132 50.0
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 2.1e-20 102.8 129 48.8
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 2.7e-20 102.4 122 50.8
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.7e-20 102.4 122 45.1
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.7e-20 102.4 48 95.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 3.6e-20 102.1 123 51.2
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 4.6e-20 101.7 138 42.0
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 4.6e-20 101.7 138 42.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 4.6e-20 101.7 125 46.4
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.1e-20 101.3 133 45.1
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 7.9e-20 100.9 128 46.1
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 7.9e-20 100.9 122 45.1
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.9e-20 100.9 126 49.2
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 1.0e-19 100.5 124 44.4
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 1.4e-19 100.1 133 46.6
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 1.4e-19 100.1 124 45.2
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 1.8e-19 99.8 123 50.4
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.3e-19 99.4 121 48.8
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 3.0e-19 99.0 125 48.0
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 3.9e-19 98.6 128 47.7
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 3.9e-19 98.6 126 45.2
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 5.1e-19 98.2 128 43.8
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 5.1e-19 98.2 122 45.9
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 6.7e-19 97.8 121 43.8
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 1.1e-18 97.1 119 44.5
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.1e-18 97.1 127 47.2
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 2.5e-18 95.9 124 44.4
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 2.5e-18 95.9 121 47.1
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 5.7e-18 94.7 127 48.0
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 5.7e-18 94.7 126 43.7
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 5.7e-18 94.7 122 45.1
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.7e-17 93.2 124 45.2
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 2.2e-17 92.8 124 46.8
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 2.2e-17 92.8 122 44.3
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 4.8e-17 91.7 129 45.7
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 6.3e-17 91.3 53 75.5
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 6.3e-17 91.3 123 47.2
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 6.3e-17 91.3 126 46.8
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.1e-16 90.5 123 46.3
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.4e-16 90.1 125 44.0
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 1.4e-16 90.1 127 42.5
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 2.4e-16 89.4 123 47.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 2.4e-16 89.4 123 44.7
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 4.1e-16 88.6 127 44.1
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 6.9e-16 87.8 53 73.6
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 9.1e-16 87.4 51 80.4
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 9.1e-16 87.4 51 80.4
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 9.1e-16 87.4 51 80.4
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 9.1e-16 87.4 120 45.8
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 9.1e-16 87.4 44 86.4
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.2e-15 87.0 51 78.4
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.5e-15 86.7 47 78.7
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 3.4e-15 85.5 47 76.6
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 3.4e-15 85.5 121 48.8
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 4.5e-15 85.1 47 78.7
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 5.9e-15 84.7 51 74.5
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 5.9e-15 84.7 44 86.4
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 5.9e-15 84.7 47 76.6
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 2.2e-14 82.8 122 42.6
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 5.0e-14 81.6 52 67.3
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 5.0e-14 81.6 123 39.0
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 5.0e-14 81.6 117 43.6
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 8.5e-14 80.9 64 57.8
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.1e-13 80.5 123 39.8
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.9e-13 79.7 98 44.9
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.9e-13 79.7 124 41.1
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 7.2e-13 77.8 116 37.1
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.2e-12 77.0 42 78.6
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.2e-12 77.0 130 38.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 3.6e-12 75.5 41 75.6
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 3.6e-12 75.5 68 51.5
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.4e-11 73.6 41 73.2
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 8.8e-11 70.9 123 37.4
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.1e-10 70.5 118 40.7
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.6e-10 69.3 112 43.8
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 2.2e-09 66.2 39 69.2
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 2.2e-09 66.2 67 49.3
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 3.7e-09 65.5 49 55.1
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 3.1e-08 62.4 42 66.7
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.9e-06 55.8 32 75.0


User provided reference genes

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