Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 3.3e-124 448.4 225 100.0
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 1.4e-101 373.2 189 98.4
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 6.2e-78 294.7 190 80.5
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 3.7e-75 285.4 190 77.9
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 5.3e-61 238.4 196 66.8
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 1.7e-59 233.4 199 61.8
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 5.4e-58 228.4 194 60.3
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 2.5e-55 219.5 191 60.2
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 3.3e-55 219.2 196 60.2
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 4.3e-55 218.8 189 61.9
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 9.6e-55 217.6 190 57.9
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 4.8e-54 215.3 193 60.6
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 1.4e-53 213.8 198 57.6
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 1.8e-53 213.4 194 59.3
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 6.9e-53 211.5 186 59.1
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 1.2e-52 210.7 187 61.0
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 2.0e-52 209.9 195 56.9
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 2.6e-52 209.5 201 58.2
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 3.4e-52 209.1 194 57.2
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 9.9e-52 207.6 195 55.4
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 1.3e-51 207.2 194 57.2
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 1.3e-51 207.2 189 57.7
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 1.7e-51 206.8 175 58.9
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 2.2e-51 206.5 225 52.9
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.2e-51 206.5 195 55.9
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 2.9e-51 206.1 190 57.9
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 3.8e-51 205.7 195 56.9
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 4.9e-51 205.3 171 60.8
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 6.4e-51 204.9 187 57.8
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 8.4e-51 204.5 176 60.2
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 2.4e-50 203.0 178 58.4
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 3.2e-50 202.6 193 56.5
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 3.2e-50 202.6 218 53.2
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 4.2e-50 202.2 187 56.7
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 4.2e-50 202.2 203 54.7
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 4.2e-50 202.2 195 54.9
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 4.2e-50 202.2 197 58.9
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 7.1e-50 201.4 177 57.1
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 7.1e-50 201.4 194 57.2
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 9.3e-50 201.1 196 57.7
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 1.2e-49 200.7 193 56.0
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 1.2e-49 200.7 196 57.7
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 2.1e-49 199.9 203 54.2
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 2.1e-49 199.9 225 49.8
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 2.7e-49 199.5 174 59.8
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 3.5e-49 199.1 191 57.1
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 7.9e-49 198.0 189 54.0
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 1.0e-48 197.6 194 54.1
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 1.3e-48 197.2 189 57.7
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 2.3e-48 196.4 195 53.8
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 3.0e-48 196.1 134 68.7
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 8.7e-48 194.5 194 53.1
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 1.9e-47 193.4 193 54.9
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 5.6e-47 191.8 200 50.5
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 7.4e-47 191.4 188 55.3
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 2.8e-46 189.5 194 54.6
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 3.7e-46 189.1 191 51.3
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 1.8e-45 186.8 190 55.3
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 1.8e-45 186.8 193 54.9
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 2.4e-45 186.4 189 52.4
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 3.1e-45 186.0 159 57.9
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 9.0e-45 184.5 194 54.6
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 1.5e-44 183.7 175 58.3
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 5.8e-44 181.8 213 48.8
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 2.9e-43 179.5 159 58.5
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 4.9e-43 178.7 204 49.5
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 6.5e-43 178.3 162 54.9
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 8.4e-43 177.9 193 51.8
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 1.9e-42 176.8 176 53.4
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.2e-42 176.0 151 60.3
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.2e-41 174.1 224 47.3
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 1.2e-41 174.1 179 53.6
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 6.0e-41 171.8 195 51.3
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 3.9e-40 169.1 173 49.7
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 1.5e-39 167.2 183 51.4
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 4.3e-39 165.6 192 51.6
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 9.6e-39 164.5 191 52.4
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 3.7e-38 162.5 179 50.8
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 1.8e-37 160.2 85 90.6
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 5.3e-37 158.7 196 45.4
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 9.0e-37 157.9 178 52.2
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 9.0e-37 157.9 191 50.3
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 2.0e-36 156.8 160 51.9
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 4.5e-36 155.6 104 76.9
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 4.5e-36 155.6 104 76.9
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 1.3e-35 154.1 178 51.7
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 1.3e-35 154.1 105 68.6
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 5.0e-35 152.1 105 67.6
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 4.2e-34 149.1 157 50.3
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 2.3e-32 143.3 118 61.0
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 3.9e-32 142.5 152 52.0
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 2.4e-29 133.3 86 76.7
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 5.9e-28 128.6 104 59.6
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 2.2e-27 126.7 105 60.0
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 4.6e-25 119.0 144 48.6
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 6.1e-25 118.6 81 72.8
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 6.1e-25 118.6 81 72.8
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 8.2e-22 108.2 201 39.8
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 1.1e-21 107.8 104 56.7
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.4e-21 107.5 97 54.6
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 1.5e-20 104.0 76 64.5
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 4.5e-20 102.4 135 45.9
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.3e-19 100.9 138 42.0
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 1.7e-19 100.5 72 65.3
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 1.4e-18 97.4 104 52.9
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 4.2e-18 95.9 106 38.7
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 5.5e-18 95.5 190 35.3
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 5.5e-18 95.5 107 38.3
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 9.4e-18 94.7 106 52.8
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 1.6e-17 94.0 57 73.7
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 6.1e-17 92.0 105 35.2
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 2.3e-16 90.1 72 61.1
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 1.3e-14 84.3 52 75.0
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 4.1e-13 79.3 94 45.7
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 1.7e-11 73.9 139 30.9
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 2.5e-10 70.1 52 65.4
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 4.2e-10 69.3 51 64.7
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 5.5e-10 68.9 52 63.5
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 1.4e-08 64.3 54 59.3


User provided reference genes

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