Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 0.0e+00 1232.6 618 100.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 0.0e+00 1221.1 618 99.2
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 0.0e+00 1199.5 618 97.1
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 0.0e+00 1121.7 618 90.5
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 0.0e+00 1083.2 618 87.2
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 0.0e+00 1080.5 618 88.2
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.1e-269 932.2 613 78.1
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.5e-264 914.4 619 72.7
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.0e-263 913.3 619 72.7
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 8.3e-258 893.6 618 71.7
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 2.8e-253 878.6 620 70.6
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 2.0e-251 872.5 632 69.6
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 7.8e-248 860.5 619 68.3
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 8.0e-245 850.5 619 67.5
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.6e-243 845.5 619 68.3
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 3.4e-243 845.1 619 68.7
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 2.2e-242 842.4 624 68.1
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 2.1e-237 825.9 619 67.7
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.1e-233 813.5 621 65.7
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 2.1e-229 799.3 626 64.1
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 4.7e-229 798.1 622 64.1
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 2.3e-228 795.8 622 64.0
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 3.4e-227 792.0 622 63.7
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.4e-227 791.6 656 63.6
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.9e-225 786.2 618 63.6
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 5.4e-225 784.6 622 64.1
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.2e-224 783.5 624 63.0
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 4.6e-224 781.6 621 62.3
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 7.8e-224 780.8 623 61.8
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 3.3e-222 775.4 622 62.5
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 7.3e-222 774.2 623 62.1
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 6.2e-221 771.2 619 63.0
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 2.4e-220 769.2 628 62.1
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 1.5e-219 766.5 584 65.6
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.1e-217 760.4 621 60.9
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 3.2e-217 758.8 626 61.3
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 3.2e-217 758.8 623 61.5
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 5.4e-217 758.1 624 61.7
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 7.1e-217 757.7 622 60.9
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 4.6e-216 755.0 619 61.2
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.9e-214 749.6 620 61.6
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 7.3e-214 747.7 621 60.2
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.1e-212 743.8 622 60.1
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.4e-212 743.4 602 62.8
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 2.4e-212 742.7 654 58.6
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 5.2e-212 741.5 624 59.5
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 9.0e-212 740.7 625 60.0
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 2.6e-211 739.2 624 59.0
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 9.9e-211 737.3 619 60.6
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.7e-210 736.5 622 59.3
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 2.9e-210 735.7 628 60.0
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 6.4e-210 734.6 626 60.2
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 6.4e-210 734.6 624 58.7
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.4e-209 733.4 624 60.6
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.4e-209 733.4 525 69.9
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.9e-209 733.0 624 60.6
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 4.2e-209 731.9 628 59.7
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 1.7e-207 726.5 621 59.3
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 8.7e-207 724.2 624 58.8
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 2.5e-206 722.6 626 58.9
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 9.6e-206 720.7 630 58.9
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 3.6e-205 718.8 625 60.2
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 8.1e-205 717.6 624 58.5
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.1e-204 717.2 633 59.4
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.4e-204 716.8 625 60.0
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.8e-204 716.5 638 57.4
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 6.9e-204 714.5 624 59.0
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 6.9e-204 714.5 624 58.2
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 9.0e-204 714.1 627 59.8
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 5.8e-203 711.4 624 58.5
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.4e-201 706.1 621 57.6
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 9.3e-201 704.1 624 57.5
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 1.6e-200 703.4 624 57.1
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 1.6e-200 703.4 634 58.2
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 3.0e-199 699.1 622 57.7
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 3.0e-199 699.1 625 56.6
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 5.1e-199 698.4 626 57.7
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 6.7e-199 698.0 621 57.8
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.3e-198 695.7 693 54.4
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 4.3e-198 695.3 621 56.8
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 5.6e-198 694.9 621 56.8
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 7.4e-198 694.5 661 55.1
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 9.6e-198 694.1 624 58.5
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.3e-197 693.7 623 57.1
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 2.1e-197 693.0 623 55.7
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 2.8e-197 692.6 621 56.8
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 6.2e-197 691.4 621 56.5
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 8.1e-197 691.0 621 56.7
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 4.0e-196 688.7 618 58.1
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 9.9e-195 684.1 607 58.0
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 2.2e-194 682.9 625 57.3
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 1.0e-191 674.1 627 55.7
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.9e-190 669.8 567 58.9
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.3e-189 667.2 632 53.5
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.1e-188 664.1 618 55.8
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 1.8e-188 663.3 685 51.2
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 4.2e-185 652.1 622 54.8
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 9.0e-180 634.4 529 59.4
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.1e-172 610.9 624 51.1
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.6e-168 597.0 645 48.2
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.6e-168 597.0 645 48.2
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.8e-167 593.6 641 48.4
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 5.0e-162 575.5 627 49.8
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.4e-148 530.8 624 46.5
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 2.7e-147 526.6 531 52.0
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 9.4e-145 518.1 487 55.6
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.8e-143 513.8 619 47.0
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 2.0e-142 510.4 648 43.5
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 4.4e-142 509.2 625 43.2
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.8e-135 485.3 405 63.5
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.4e-132 477.6 385 59.2
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 4.5e-131 472.6 406 58.4
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.0e-128 461.8 408 59.8
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.5e-121 441.0 579 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 2.0e-118 430.6 468 46.6
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 1.1e-79 302.0 751 28.5
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 2.8e-72 277.3 637 33.1
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.4e-71 275.0 270 55.9
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 4.0e-71 273.5 631 30.4
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.2e-59 235.3 247 46.2
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 5.3e-55 219.9 389 35.7
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.9e-54 216.5 130 77.7
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 3.1e-47 194.1 164 59.1
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 2.6e-46 191.0 215 47.0
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 4.7e-43 180.3 143 60.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.9e-37 161.0 649 24.0
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 5.2e-34 150.2 163 49.1
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 2.8e-32 144.4 117 59.0
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 1.1e-31 142.5 103 69.9
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 7.0e-31 139.8 163 47.2
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 9.8e-25 119.4 187 38.5
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 4.9e-24 117.1 150 44.7
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 7.0e-23 113.2 95 58.9
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.3e-21 109.0 241 33.6
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 5.2e-18 97.1 66 71.2
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.2e-17 95.9 81 60.5
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 7.5e-17 93.2 68 69.1
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 6.3e-16 90.1 66 68.2
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 3.2e-15 87.8 164 35.4
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 2.7e-14 84.7 76 50.0
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 7.3e-12 76.6 52 63.5
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 6.1e-11 73.6 123 39.8
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 8.9e-10 69.7 54 55.6
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 1.2e-09 69.3 71 56.3
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 2.0e-09 68.6 65 53.8
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 2.2e-08 65.1 62 50.0
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 1.4e-07 62.4 43 67.4
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 1.6e-06 58.9 45 66.7
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 2.0e-06 58.5 58 46.6
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 2.0e-06 58.5 102 34.3
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 6.0e-06 57.0 87 43.7


User provided reference genes

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