Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 4.1e-122 441.4 227 100.0
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 8.0e-118 427.2 231 96.5
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 1.4e-114 416.4 231 93.5
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.2e-105 386.7 230 86.5
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 1.3e-96 356.7 229 81.7
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.7e-96 356.3 230 83.0
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 1.9e-87 326.2 227 76.7
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 2.8e-86 322.4 239 72.4
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 1.4e-85 320.1 234 73.1
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 3.1e-85 318.9 228 75.4
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 1.2e-84 317.0 230 71.3
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 1.2e-84 317.0 230 71.3
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 1.2e-84 317.0 233 73.8
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 2.0e-84 316.2 229 71.6
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 2.0e-84 316.2 229 71.6
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 2.0e-84 316.2 222 75.7
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 2.6e-84 315.8 232 73.3
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 4.5e-84 315.1 234 73.5
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 9.9e-84 313.9 223 73.5
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 9.9e-84 313.9 223 73.5
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 9.9e-84 313.9 223 73.5
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 9.9e-84 313.9 223 73.5
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 9.9e-84 313.9 229 74.7
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 1.7e-83 313.2 226 71.7
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 3.8e-83 312.0 226 72.1
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 4.9e-83 311.6 227 72.7
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 4.9e-83 311.6 227 72.7
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 4.9e-83 311.6 226 72.6
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 6.4e-83 311.2 231 71.9
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 8.4e-83 310.8 231 71.4
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 8.4e-83 310.8 226 73.0
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 1.9e-82 309.7 231 71.9
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 2.4e-82 309.3 235 71.9
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 3.2e-82 308.9 237 68.8
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 4.2e-82 308.5 233 71.7
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 5.4e-82 308.1 227 72.2
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 7.1e-82 307.8 234 71.4
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 9.3e-82 307.4 233 70.4
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 1.2e-81 307.0 234 71.4
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 3.5e-81 305.4 233 70.4
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 7.9e-81 304.3 227 72.2
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 7.9e-81 304.3 233 70.0
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 3.0e-80 302.4 237 69.6
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 5.1e-80 301.6 220 74.5
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 6.7e-80 301.2 259 63.3
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 6.7e-80 301.2 230 70.9
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 8.7e-80 300.8 224 71.9
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 1.5e-79 300.1 232 71.6
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 9.6e-79 297.4 235 70.2
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 1.6e-78 296.6 229 68.6
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 1.6e-78 296.6 226 69.9
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 1.6e-78 296.6 228 71.9
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 2.1e-78 296.2 236 69.1
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 2.1e-78 296.2 237 70.5
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 2.1e-78 296.2 231 68.8
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 3.7e-78 295.4 228 70.2
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 3.7e-78 295.4 228 68.9
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 4.8e-78 295.0 234 68.8
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 4.8e-78 295.0 222 70.7
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 1.1e-77 293.9 229 69.0
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 1.4e-77 293.5 231 68.0
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 6.9e-77 291.2 234 67.5
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 2.6e-76 289.3 223 68.6
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 4.5e-76 288.5 231 70.6
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 8.4e-75 284.3 231 66.7
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 1.9e-74 283.1 227 65.2
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 2.5e-74 282.7 231 66.2
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 2.7e-73 279.3 224 67.0
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 1.3e-72 276.9 186 76.3
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 5.1e-72 275.0 216 68.5
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 6.7e-72 274.6 202 74.8
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 5.7e-71 271.6 236 64.8
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 9.6e-71 270.8 227 67.0
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 1.6e-70 270.0 230 63.0
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 1.4e-69 266.9 236 65.3
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 1.8e-69 266.5 235 63.4
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 4.1e-69 265.4 224 66.1
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 1.5e-68 263.5 237 62.4
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 1.5e-68 263.5 240 62.9
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 5.8e-68 261.5 190 67.9
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 7.6e-68 261.2 237 62.0
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 1.7e-67 260.0 237 61.2
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 1.9e-66 256.5 172 72.1
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 9.3e-66 254.2 229 62.4
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 7.4e-63 244.6 226 60.2
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 4.8e-62 241.9 227 57.7
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 6.3e-62 241.5 220 60.0
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 1.1e-61 240.7 221 61.5
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 1.8e-61 240.0 233 60.5
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 5.3e-61 238.4 180 69.4
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 2.0e-60 236.5 190 66.3
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 5.9e-60 235.0 235 56.2
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 1.7e-59 233.4 156 73.1
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 1.1e-55 220.7 132 81.1
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 1.1e-55 220.7 141 77.3
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 1.7e-54 216.9 163 69.3
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 8.5e-51 204.5 133 75.2
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 1.3e-46 190.7 119 79.0
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 8.2e-46 188.0 226 51.8
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 2.2e-43 179.9 95 87.4
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 3.8e-43 179.1 179 52.5
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 5.0e-43 178.7 136 71.3
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 2.5e-42 176.4 192 47.9
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 2.7e-41 172.9 183 51.9
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 4.8e-38 162.2 186 45.7
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 2.2e-35 153.3 137 62.0
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 1.5e-34 150.6 130 64.6
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 5.5e-34 148.7 229 44.5
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 7.2e-34 148.3 172 45.3
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 4.8e-30 135.6 160 45.6
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 8.5e-27 124.8 223 41.3
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 1.7e-19 100.5 91 67.0
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 3.3e-18 96.3 57 80.7
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 1.3e-14 84.3 91 56.0
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 4.1e-13 79.3 221 26.7
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 7.8e-12 75.1 138 26.8
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 1.8e-08 63.9 217 29.0


User provided reference genes

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