Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 0.0e+00 1175.6 822 100.0
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 0.0e+00 1125.5 826 96.9
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.4e-230 802.0 864 73.4
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.2e-198 697.6 849 63.6
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 8.6e-194 681.4 847 56.3
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 3.2e-116 423.7 875 37.0
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 9.7e-97 359.0 211 87.7
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.9e-92 344.7 936 30.8
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 4.7e-91 340.1 865 33.6
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.8e-88 330.9 859 33.9
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.1e-87 328.9 862 34.5
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.4e-87 327.8 856 32.5
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.1e-87 327.4 852 31.7
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 2.0e-86 324.7 852 30.8
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.3e-85 322.0 866 33.0
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.9e-85 320.9 849 31.2
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 4.2e-84 317.0 887 31.3
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 5.5e-84 316.6 830 31.9
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 9.5e-84 315.8 849 31.2
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.0e-82 312.4 853 31.8
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 4.4e-81 307.0 845 31.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.3e-80 305.4 833 32.1
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.2e-80 304.7 848 29.8
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.4e-79 302.0 852 29.8
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 7.0e-79 299.7 853 30.5
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 9.2e-79 299.3 427 47.5
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.0e-78 298.1 873 29.9
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 2.7e-78 297.7 937 27.9
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.0e-77 295.8 888 30.3
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 2.3e-77 294.7 852 29.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.9e-77 294.3 853 29.5
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.9e-77 293.9 794 31.6
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.9e-77 293.9 873 30.0
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.9e-77 293.9 901 30.0
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 5.0e-77 293.5 853 30.7
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 5.0e-77 293.5 415 45.5
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 6.6e-77 293.1 833 32.2
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 4.3e-76 290.4 867 30.1
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 7.3e-76 289.7 838 30.3
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.2e-75 288.9 867 33.3
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.2e-75 288.9 838 29.0
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.2e-75 288.9 828 34.1
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.8e-75 287.7 419 46.3
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 3.6e-75 287.3 836 32.3
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 3.6e-75 287.3 443 44.0
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 4.7e-75 287.0 858 29.1
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 6.1e-75 286.6 861 31.2
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 3.1e-74 284.3 857 31.7
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.1e-74 284.3 861 31.2
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 5.2e-74 283.5 844 33.4
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 6.8e-74 283.1 833 30.6
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 2.6e-73 281.2 446 43.5
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 5.8e-73 280.0 857 32.2
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 5.8e-73 280.0 856 30.4
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 5.8e-73 280.0 850 29.9
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 9.8e-73 279.3 883 30.7
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 9.8e-73 279.3 420 45.2
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 4.1e-71 273.9 834 30.7
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 4.1e-71 273.9 828 29.1
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 4.1e-71 273.9 852 28.4
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 7.0e-71 273.1 777 32.0
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.0e-70 271.6 877 29.3
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.0e-70 271.6 878 30.2
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 2.0e-70 271.6 897 29.7
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.7e-70 271.2 862 31.1
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 3.5e-70 270.8 834 33.0
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 4.6e-70 270.4 860 28.4
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.0e-69 269.2 831 31.8
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.0e-69 269.2 831 31.8
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.3e-69 268.9 830 33.9
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.3e-69 268.9 835 30.3
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.1e-68 265.8 847 41.0
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.9e-68 265.0 847 36.2
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 2.1e-67 261.5 829 32.7
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 2.1e-67 261.5 882 28.9
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.1e-67 261.5 1052 27.0
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 8.0e-67 259.6 856 30.3
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.8e-66 258.5 836 32.1
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 3.1e-66 257.7 829 29.8
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 4.0e-66 257.3 907 29.0
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 4.0e-66 257.3 895 29.2
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 5.2e-66 256.9 454 41.9
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.2e-65 255.8 832 38.9
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 2.0e-65 255.0 860 29.0
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.9e-64 251.1 846 33.3
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 4.9e-64 250.4 855 28.8
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.4e-64 250.0 862 34.0
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 2.4e-63 248.1 815 31.7
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.2e-62 245.7 828 30.7
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.7e-62 244.6 834 28.7
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.0e-61 242.7 835 29.9
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.3e-61 242.3 831 30.9
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.0e-61 241.1 859 28.4
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-59 235.7 831 27.7
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.8e-59 234.6 903 27.6
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 6.2e-59 233.4 853 30.0
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 6.8e-58 229.9 872 29.4
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 8.9e-58 229.6 829 29.2
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 5.8e-57 226.9 858 29.6
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 8.3e-56 223.0 959 26.1
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.6e-54 218.8 813 28.3
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 2.7e-54 218.0 845 28.8
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 3.5e-54 217.6 891 26.2
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.5e-54 217.6 748 29.7
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.0e-53 216.1 889 25.6
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 2.3e-53 214.9 763 30.0
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.3e-52 210.7 842 27.7
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.6e-51 207.6 776 30.4
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 8.9e-50 203.0 826 26.4
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.8e-48 197.6 883 24.9
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.8e-48 197.6 777 29.1
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 7.1e-47 193.4 877 25.9
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 9.3e-47 193.0 868 26.8
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 1.1e-44 186.0 590 30.2
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.9e-44 185.3 837 26.3
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 7.3e-44 183.3 832 25.5
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 5.8e-41 173.7 565 29.6
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 7.6e-41 173.3 843 26.7
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.8e-40 171.0 834 27.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.4e-39 169.1 714 28.3
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 7.8e-38 163.3 193 51.3
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 3.9e-37 161.0 824 26.5
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 7.3e-36 156.8 354 35.3
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.1e-34 152.9 812 23.3
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 4.0e-34 151.0 834 27.3
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 7.6e-33 146.7 112 72.3
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.4e-31 142.5 467 29.8
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.9e-28 132.1 434 27.4
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.8e-26 125.6 226 37.2
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 2.0e-25 122.1 138 44.2
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 5.8e-25 120.6 799 26.5
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 5.8e-25 120.6 197 41.6
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.7e-24 119.0 815 22.3
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.4e-23 115.9 184 38.0
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 7.1e-23 113.6 460 26.1
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 9.3e-23 113.2 806 21.8
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 2.3e-21 108.6 806 21.3
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.3e-20 104.4 87 58.6
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.3e-19 102.8 134 43.3
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.8e-19 101.7 864 21.6
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.0e-16 93.2 405 29.9
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.3e-16 92.8 405 29.9
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 5.5e-15 87.4 411 29.7
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 5.5e-15 87.4 84 48.8
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.1e-14 85.5 99 47.5
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 6.1e-14 84.0 783 19.8
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 7.9e-14 83.6 413 26.6
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.8e-13 82.4 133 44.4
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.8e-13 82.4 387 34.6
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.8e-13 82.4 118 42.4
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.0e-13 81.6 65 60.0
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.0e-13 81.6 90 43.3
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 8.7e-13 80.1 413 26.2
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.9e-12 79.0 93 47.3
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 9.7e-12 76.6 84 42.9
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 2.8e-11 75.1 61 54.1
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 6.3e-11 73.9 106 39.6
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.3e-11 73.9 88 43.2
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.4e-10 72.8 88 43.2
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 4.1e-10 71.2 87 41.4
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 1.0e-08 66.6 99 39.4
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 1.7e-08 65.9 188 25.5
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 5.0e-08 64.3 104 40.4
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 5.0e-08 64.3 77 45.5
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 4.2e-07 61.2 143 33.6
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 4.6e-06 57.8 850 19.9


User provided reference genes

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