Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 6.9e-47 190.3 95 100.0
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 5.9e-46 187.2 95 97.9
PGSC0003DMG400018612 Solanum tuberosum HOM05D032858 ORTHO05D036913 3.2e-28 128.3 93 78.5
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 1.2e-25 119.8 95 67.4
Nitab4.5_0001893g0010 Nicotiana tabacum HOM05D032858 ORTHO05D036913 4.4e-17 91.3 98 64.3
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 1.3e-16 89.7 93 60.2
Nitab4.5_0000740g0080 Nicotiana tabacum HOM05D032858 ORTHO05D036913 1.7e-16 89.4 98 64.3
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 1.1e-15 86.7 96 53.1
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 1.1e-15 86.7 80 60.0
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 2.4e-15 85.5 80 58.8
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 3.1e-15 85.1 76 63.2
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 4.1e-15 84.7 93 54.8
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 1.6e-14 82.8 85 57.6
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 3.5e-14 81.6 97 52.6
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 3.5e-14 81.6 96 53.1
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 3.5e-14 81.6 77 58.4
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 4.5e-14 81.3 82 56.1
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 4.5e-14 81.3 71 62.0
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 4.5e-14 81.3 74 59.5
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 5.9e-14 80.9 98 53.1
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 5.9e-14 80.9 84 56.0
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 7.7e-14 80.5 82 56.1
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 1.0e-13 80.1 87 51.7
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 1.0e-13 80.1 94 54.3
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 1.3e-13 79.7 101 49.5
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 1.3e-13 79.7 77 57.1
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 1.3e-13 79.7 81 59.3
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 2.3e-13 79.0 85 55.3
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 2.3e-13 79.0 94 52.1
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 2.3e-13 79.0 88 52.3
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 2.9e-13 78.6 87 52.9
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 5.0e-13 77.8 98 52.0
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 5.0e-13 77.8 100 49.0
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 1.5e-12 76.3 79 54.4
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 1.5e-12 76.3 75 56.0
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 1.9e-12 75.9 94 51.1
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.9e-12 75.9 90 51.1
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.9e-12 75.9 90 51.1
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 1.9e-12 75.9 90 51.1
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 1.9e-12 75.9 82 54.9
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 2.5e-12 75.5 82 52.4
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 3.2e-12 75.1 79 53.2
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 3.2e-12 75.1 81 55.6
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 4.2e-12 74.7 83 51.8
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 4.2e-12 74.7 48 77.1
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 4.2e-12 74.7 76 56.6
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 4.2e-12 74.7 81 54.3
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 4.2e-12 74.7 84 51.2
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 7.2e-12 73.9 48 75.0
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 9.5e-12 73.6 74 56.8
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 1.2e-11 73.2 62 62.9
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 1.2e-11 73.2 83 50.6
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 1.6e-11 72.8 83 50.6
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.6e-11 72.8 90 50.0
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.6e-11 72.8 82 52.4
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 1.6e-11 72.8 84 52.4
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 2.8e-11 72.0 52 63.5
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 3.6e-11 71.6 83 50.6
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 3.6e-11 71.6 83 50.6
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 3.6e-11 71.6 92 51.1
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 4.7e-11 71.2 49 71.4
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 6.1e-11 70.9 49 67.3
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 6.1e-11 70.9 76 52.6
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 6.1e-11 70.9 84 54.8
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 6.1e-11 70.9 66 63.6
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 8.0e-11 70.5 60 61.7
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 8.0e-11 70.5 62 59.7
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 1.0e-10 70.1 68 55.9
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 1.8e-10 69.3 60 60.0
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 2.3e-10 68.9 83 54.2
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 3.0e-10 68.6 81 53.1
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 4.0e-10 68.2 73 54.8
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 4.0e-10 68.2 73 54.8
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 4.0e-10 68.2 73 54.8
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 4.0e-10 68.2 73 54.8
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 4.0e-10 68.2 73 54.8
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 4.0e-10 68.2 62 59.7
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 5.2e-10 67.8 73 54.8
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 5.2e-10 67.8 58 60.3
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 6.8e-10 67.4 83 53.0
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 6.8e-10 67.4 99 48.5
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 8.8e-10 67.0 50 66.0
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.5e-09 66.2 90 52.2
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 1.5e-09 66.2 64 54.7
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 2.0e-09 65.9 71 54.9
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.6e-09 65.5 81 50.6
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 3.4e-09 65.1 61 57.4
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 3.4e-09 65.1 61 57.4
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 4.4e-09 64.7 72 52.8
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 4.4e-09 64.7 94 46.8
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 7.5e-09 63.9 51 62.7
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 7.5e-09 63.9 71 54.9
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 7.5e-09 63.9 73 52.1
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 7.5e-09 63.9 82 47.6
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.7e-08 62.8 49 59.2
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.8e-08 62.0 54 59.3
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.8e-08 62.0 54 59.3
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.8e-08 62.0 54 59.3
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.7e-08 61.6 84 45.2
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 3.7e-08 61.6 67 56.7
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 6.3e-08 60.8 75 45.3
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 8.3e-08 60.5 59 50.8
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 1.1e-07 60.1 85 51.8
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 1.1e-07 60.1 89 46.1
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 1.4e-07 59.7 74 52.7
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.8e-07 59.3 71 45.1
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 2.4e-07 58.9 85 43.5
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 4.1e-07 58.2 89 46.1
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 4.1e-07 58.2 89 44.9
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 5.4e-07 57.8 54 59.3
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 5.4e-07 57.8 58 50.0
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 5.4e-07 57.8 60 51.7
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 7.0e-07 57.4 44 61.4
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 9.2e-07 57.0 58 50.0
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 2.0e-06 55.8 38 68.4
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 2.7e-06 55.5 84 42.9
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 3.5e-06 55.1 64 48.4
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.5e-06 55.1 34 73.5
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 4.5e-06 54.7 44 59.1
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 4.5e-06 54.7 58 51.7
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 4.5e-06 54.7 65 44.6
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 4.5e-06 54.7 62 50.0
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 4.5e-06 54.7 51 51.0
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 5.9e-06 54.3 84 41.7
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 7.8e-06 53.9 66 47.0


User provided reference genes

Program Settings