Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.0e-83 312.4 159 100.0
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 4.7e-64 248.1 135 97.8
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.6e-49 198.0 134 75.4
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-45 186.8 124 77.4
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.2e-45 186.0 129 74.4
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.4e-44 182.6 136 72.1
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.3e-39 166.0 141 64.5
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.5e-38 163.3 132 66.7
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 4.4e-38 161.8 139 65.5
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.5e-33 146.7 143 60.8
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.5e-33 146.7 143 60.8
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.9e-33 146.4 135 59.3
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 5.6e-33 144.8 133 60.2
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 9.5e-33 144.1 109 66.1
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.2e-32 143.7 135 58.5
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 6.2e-32 141.4 135 60.0
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 6.2e-32 141.4 138 55.1
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.1e-31 140.6 106 67.9
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 1.5e-30 136.7 123 61.0
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.5e-30 136.7 122 59.8
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 2.0e-30 136.3 135 56.3
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.4e-30 135.6 153 52.3
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 4.4e-30 135.2 133 54.1
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 9.9e-30 134.0 142 55.6
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.3e-29 133.7 144 56.9
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.7e-29 133.3 126 54.8
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.2e-29 132.9 135 57.8
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.2e-29 132.9 138 54.3
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.2e-29 132.9 121 62.8
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 3.7e-29 132.1 130 58.5
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 4.9e-29 131.7 125 59.2
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 4.9e-29 131.7 109 63.3
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 4.9e-29 131.7 126 59.5
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 8.4e-29 131.0 139 56.1
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 8.4e-29 131.0 138 54.3
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.9e-28 129.8 134 57.5
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.9e-28 129.8 134 52.2
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.4e-28 129.4 134 56.7
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 3.2e-28 129.0 130 58.5
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 3.2e-28 129.0 136 56.6
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 7.1e-28 127.9 126 56.3
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 7.1e-28 127.9 82 84.1
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 9.2e-28 127.5 136 53.7
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.2e-27 127.1 127 57.5
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.2e-27 127.1 134 53.7
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 2.1e-27 126.3 115 59.1
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 2.7e-27 125.9 129 57.4
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 2.7e-27 125.9 137 53.3
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 3.5e-27 125.6 112 61.6
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 4.6e-27 125.2 128 54.7
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 7.8e-27 124.4 122 56.6
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 7.8e-27 124.4 136 50.7
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 7.8e-27 124.4 109 56.9
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.8e-27 124.4 126 53.2
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.0e-26 124.0 127 50.4
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 1.3e-26 123.6 137 54.7
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.7e-26 123.2 125 54.4
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.7e-26 123.2 125 54.4
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 1.7e-26 123.2 112 58.9
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.7e-26 123.2 121 54.5
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 3.0e-26 122.5 126 54.0
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 3.0e-26 122.5 139 51.8
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 3.9e-26 122.1 124 54.8
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.9e-26 122.1 134 50.7
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 6.6e-26 121.3 139 51.1
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.6e-26 121.3 126 49.2
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 6.6e-26 121.3 134 49.3
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 6.6e-26 121.3 141 51.1
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 8.6e-26 120.9 108 60.2
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 8.6e-26 120.9 118 55.1
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 8.6e-26 120.9 81 71.6
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.1e-25 120.6 108 60.2
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.5e-25 120.2 108 58.3
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.9e-25 119.8 118 55.1
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 1.9e-25 119.8 110 59.1
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 1.9e-25 119.8 110 59.1
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.9e-25 119.8 125 54.4
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.5e-25 119.4 118 56.8
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.5e-25 119.4 124 56.5
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 3.3e-25 119.0 115 54.8
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 4.3e-25 118.6 100 62.0
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 5.6e-25 118.2 122 52.5
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 9.6e-25 117.5 131 50.4
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 9.6e-25 117.5 69 81.2
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.2e-24 117.1 115 55.7
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.2e-24 117.1 127 53.5
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.6e-24 116.7 133 53.4
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.1e-24 116.3 139 49.6
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 6.2e-24 114.8 139 48.9
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 6.2e-24 114.8 119 51.3
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 8.1e-24 114.4 118 55.9
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.1e-23 114.0 100 60.0
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.8e-23 113.2 60 81.7
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.8e-23 113.2 118 53.4
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.4e-23 112.8 132 50.0
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 3.1e-23 112.5 116 55.2
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 3.1e-23 112.5 126 54.0
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 6.8e-23 111.3 133 51.1
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 8.9e-23 110.9 116 53.4
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 8.9e-23 110.9 133 52.6
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.2e-22 110.5 133 51.9
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.5e-22 110.2 189 40.2
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.5e-22 110.2 111 55.9
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.0e-22 109.8 124 46.8
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.0e-22 109.8 127 48.8
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 9.9e-22 107.5 139 49.6
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.3e-21 107.1 120 52.5
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.7e-21 106.7 137 48.2
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 2.2e-21 106.3 89 64.0
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 3.8e-21 105.5 66 74.2
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.9e-21 105.1 73 67.1
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 8.4e-21 104.4 134 47.0
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 8.4e-21 104.4 104 54.8
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.4e-20 102.8 61 77.0
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 4.2e-20 102.1 108 53.7
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 4.2e-20 102.1 108 53.7
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 9.3e-20 100.9 142 43.7
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.2e-19 100.5 130 45.4
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.6e-19 100.1 62 74.2
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 2.7e-19 99.4 65 72.3
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 6.0e-19 98.2 103 54.4
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.8e-19 97.8 144 49.3
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 7.8e-19 97.8 110 50.0
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 3.0e-18 95.9 95 57.9
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 3.9e-18 95.5 111 55.0
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 3.9e-18 95.5 111 54.1
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 5.1e-18 95.1 111 52.3
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.5e-17 93.6 110 51.8
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.3e-16 90.5 114 55.3
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.3e-16 90.5 114 55.3
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 3.1e-15 85.9 81 61.7
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 3.1e-15 85.9 66 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 5.3e-15 85.1 70 58.6
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 6.9e-15 84.7 115 48.7
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 6.9e-15 84.7 96 51.0
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 1.2e-14 84.0 50 68.0
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 4.4e-14 82.0 50 68.0
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 9.9e-14 80.9 41 80.5
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 9.9e-14 80.9 135 43.7
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 4.9e-13 78.6 104 47.1
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 3.2e-12 75.9 49 63.3
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 6.6e-10 68.2 49 67.3
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 1.5e-09 67.0 37 81.1
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.1e-08 63.2 88 44.3
CAN.G536.1 Capsicum annuum HOM05D006894 ORTHO05D000067 4.8e-08 62.0 53 60.4
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 5.3e-07 58.5 76 43.4
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 5.3e-07 58.5 37 73.0
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 3.4e-06 55.8 104 45.2
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 4.5e-06 55.5 49 51.0
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 5.8e-06 55.1 36 69.4
Nitab4.5_0001726g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.6e-06 54.7 26 92.3


User provided reference genes

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