Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g013090.3 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.1e-58 228.8 112 100.0
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.4e-27 126.3 100 67.0
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 7.2e-27 124.0 100 66.0
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 4.7e-26 121.3 100 63.0
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 4.7e-26 121.3 100 63.0
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 4.7e-26 121.3 100 63.0
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 4.7e-26 121.3 100 63.0
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 1.5e-24 116.3 100 61.0
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 1.0e-17 93.6 100 52.0
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 8.8e-17 90.5 111 45.9
Lj9P89T20 Lonicera japonica HOM05D001750 ORTHO05D001825 8.8e-17 90.5 100 51.0
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 7.5e-16 87.4 104 47.1
HanXRQChr01g0020111 Helianthus annuus HOM05D001750 ORTHO05D001825 4.8e-15 84.7 100 45.0
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 4.8e-15 84.7 100 45.0
HanXRQChr05g0152391 Helianthus annuus HOM05D001750 ORTHO05D001825 4.8e-15 84.7 100 45.0
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 4.8e-15 84.7 100 45.0
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 4.8e-15 84.7 100 45.0
HanXRQChr11g0323701 Helianthus annuus HOM05D001750 ORTHO05D001825 4.8e-15 84.7 100 45.0
HanXRQChr13g0413591 Helianthus annuus HOM05D001750 ORTHO05D001825 4.8e-15 84.7 100 45.0
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 4.8e-15 84.7 100 45.0
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 3.1e-14 82.0 98 45.9
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 4.1e-14 81.6 111 40.5
EL10Ac1g00371 Beta vulgaris HOM05D001750 ORTHO05D001825 7.0e-14 80.9 98 45.9
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 2.7e-13 79.0 112 41.1
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 2.7e-13 79.0 112 41.1
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 2.7e-13 79.0 112 41.1
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 2.7e-13 79.0 100 48.0
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 3.5e-13 78.6 102 44.1
BolSC35t60699H Brassica oleracea HOM05D001750 ORTHO05D001825 5.9e-13 77.8 112 40.2
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 5.9e-13 77.8 112 40.2
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 5.9e-13 77.8 112 40.2
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 5.9e-13 77.8 112 40.2
EL10Ac5g11664 Beta vulgaris HOM05D001750 ORTHO05D001825 1.0e-12 77.0 98 43.9
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.0e-12 77.0 99 44.4
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.0e-12 77.0 99 44.4
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 1.3e-12 76.6 112 37.5
arahy.Tifrunner.gnm1.ann1.4DVC71 Arachis hypogaea HOM05D001750 ORTHO05D001825 2.2e-12 75.9 109 43.1
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 2.2e-12 75.9 109 43.1
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.9e-12 75.5 97 45.4
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 2.9e-12 75.5 107 42.1
Gohir.A12G084295 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-11 73.6 104 42.3
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.5e-11 73.2 111 40.5
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.5e-11 73.2 111 40.5
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.5e-11 73.2 111 40.5
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.5e-11 73.2 111 40.5
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 1.5e-11 73.2 99 42.4
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 1.5e-11 73.2 99 42.4
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 2.5e-11 72.4 99 41.4
HanXRQChr17g0557811 Helianthus annuus HOM05D001750 ORTHO05D001825 2.7e-10 68.9 83 44.6
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 6.1e-10 67.8 94 42.6
Lalb_Chr16g0388591 Lupinus albus HOM05D001750 ORTHO05D001825 2.0e-08 62.8 90 41.1
Prupe.2G145900 Prunus persica HOM05D001750 ORTHO05D001825 7.5e-08 60.8 93 40.9
BolC2t10591H Brassica oleracea HOM05D001750 ORTHO05D001825 2.8e-07 58.9 90 40.0
RcHm_v2.0_CPg0501681 Rosa chinensis HOM05D001750 ORTHO05D001825 7.0e-06 54.3 79 45.6


User provided reference genes

Program Settings