Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g013080.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 9.4e-36 152.9 73 100.0
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 8.6e-21 103.2 57 84.2
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.5e-20 100.5 57 82.5
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 7.2e-20 100.1 57 80.7
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 7.2e-20 100.1 57 80.7
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 7.2e-20 100.1 57 80.7
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 7.2e-20 100.1 57 80.7
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 6.1e-19 97.1 57 78.9
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 1.3e-16 89.4 57 68.4
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.8e-16 88.2 57 68.4
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 8.3e-16 86.7 57 68.4
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 4.1e-15 84.3 62 62.9
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-14 82.8 60 61.7
HanXRQChr05g0152391 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-14 82.8 60 61.7
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-14 82.8 60 61.7
HanXRQChr11g0323701 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-14 82.8 60 61.7
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-14 82.8 60 61.7
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 4.6e-14 80.9 57 63.2
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 7.8e-14 80.1 57 63.2
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.3e-13 79.3 57 63.2
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.3e-13 79.3 57 63.2
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-12 76.3 57 61.4
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 1.1e-12 76.3 57 61.4
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 7.3e-12 73.6 65 49.2
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 7.3e-12 73.6 65 49.2
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 9.5e-12 73.2 64 56.2
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 6.1e-11 70.5 57 54.4
arahy.Tifrunner.gnm1.ann1.4DVC71 Arachis hypogaea HOM05D001750 ORTHO05D001825 1.0e-10 69.7 57 49.1
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 1.8e-10 68.9 61 49.2
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 1.8e-10 68.9 61 49.2
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 1.8e-10 68.9 61 49.2
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 1.8e-10 68.9 61 49.2
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 2.3e-10 68.6 61 49.2
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.0e-10 67.8 57 57.9
EL10Ac5g11664 Beta vulgaris HOM05D001750 ORTHO05D001825 6.8e-10 67.0 57 50.9
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 6.8e-10 67.0 57 50.9
Gohir.A12G084295 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.9e-10 66.6 57 56.1
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 8.9e-10 66.6 59 54.2
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 2.0e-09 65.5 56 51.8
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 2.0e-09 65.5 56 51.8
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 6.4e-08 60.5 55 47.3
Nn1g00556 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.9e-07 58.9 39 64.1
HanXRQChr01g0020111 Helianthus annuus HOM05D001750 ORTHO05D001825 3.5e-06 54.7 37 62.2
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 3.5e-06 54.7 45 55.6
Solyc11g044643.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.8e-06 53.5 57 54.4


User provided reference genes

Program Settings