Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.2e-115 419.1 228 100.0
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 2.9e-107 392.1 224 95.5
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 1.8e-101 372.9 224 90.2
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 6.2e-86 321.2 225 82.7
Solyc05g012820.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.2e-65 253.8 148 91.2
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 9.7e-63 244.2 225 60.4
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.8e-61 240.0 225 59.1
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.6e-60 236.1 225 60.4
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.5e-60 235.3 225 59.6
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.1e-58 230.7 225 58.2
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 2.9e-51 206.1 212 55.7
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 3.8e-51 205.7 224 53.6
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 3.2e-50 202.6 224 52.7
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 4.7e-49 198.7 223 53.4
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 5.0e-43 178.7 216 49.5
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 6.8e-32 141.7 137 57.7
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 3.4e-31 139.4 229 41.9
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.4e-29 133.3 228 41.2
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.0e-28 130.2 146 52.7
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.0e-28 130.2 229 43.2
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.9e-27 126.3 136 55.1
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 4.3e-26 122.5 225 37.3
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 9.5e-26 121.3 227 37.0
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 5.2e-24 115.5 216 37.0
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 4.4e-23 112.5 234 36.8
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.4e-23 112.5 101 66.3
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 7.5e-23 111.7 217 35.0
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 3.7e-22 109.4 212 37.3
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 3.7e-22 109.4 223 36.3
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 8.3e-22 108.2 228 36.8
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 1.9e-21 107.1 208 33.7
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.9e-21 107.1 234 37.2
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 3.2e-21 106.3 215 35.8
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 4.1e-21 105.9 223 35.0
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 9.2e-21 104.8 219 38.4
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 1.2e-20 104.4 215 37.2
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 1.6e-20 104.0 224 33.9
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 2.0e-20 103.6 210 34.8
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 2.7e-20 103.2 226 35.0
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 2.7e-20 103.2 236 37.7
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 2.7e-20 103.2 225 33.3
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 4.6e-20 102.4 217 36.4
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 4.6e-20 102.4 217 36.9
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 4.6e-20 102.4 210 33.3
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 6.0e-20 102.1 206 37.4
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 7.8e-20 101.7 224 33.5
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 1.3e-19 100.9 222 37.4
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.3e-19 100.9 218 36.7
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.3e-19 100.9 206 36.9
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 1.7e-19 100.5 222 34.2
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 2.3e-19 100.1 221 33.5
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 5.0e-19 99.0 229 38.0
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 6.6e-19 98.6 216 33.3
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 8.6e-19 98.2 217 34.6
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 1.1e-18 97.8 229 35.4
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.1e-18 97.8 217 34.1
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.1e-18 97.8 223 35.4
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 1.1e-18 97.8 214 34.6
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 1.1e-18 97.8 225 38.2
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 1.1e-18 97.8 221 36.7
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.5e-18 96.7 223 35.4
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 4.3e-18 95.9 215 37.7
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 5.6e-18 95.5 232 34.1
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 7.3e-18 95.1 230 35.7
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 9.5e-18 94.7 230 37.0
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 1.6e-17 94.0 220 35.0
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.1e-17 93.6 233 34.3
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 2.8e-17 93.2 223 34.1
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.8e-17 93.2 214 34.6
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 3.6e-17 92.8 223 35.4
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 3.6e-17 92.8 233 33.5
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.6e-17 92.8 217 33.6
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 3.6e-17 92.8 228 34.6
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 4.7e-17 92.4 221 34.4
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.7e-17 92.4 220 35.9
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 6.2e-17 92.0 217 33.2
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 6.2e-17 92.0 226 33.2
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 8.1e-17 91.7 211 33.2
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 1.4e-16 90.9 217 30.4
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 1.4e-16 90.9 238 34.5
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 2.3e-16 90.1 213 33.8
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 2.3e-16 90.1 220 32.3
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.1e-16 89.7 219 35.6
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 5.2e-16 89.0 220 34.1
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 5.2e-16 89.0 220 34.1
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 6.8e-16 88.6 210 33.8
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.2e-15 87.8 215 33.5
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.2e-15 87.8 214 33.2
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 1.5e-15 87.4 235 33.6
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 1.5e-15 87.4 224 33.5
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 1.5e-15 87.4 224 33.5
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 1.5e-15 87.4 224 33.5
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 1.5e-15 87.4 237 33.8
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 3.4e-15 86.3 183 35.5
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 4.4e-15 85.9 227 34.8
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 4.4e-15 85.9 213 32.9
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 5.8e-15 85.5 228 34.2
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 7.5e-15 85.1 211 34.1
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 9.8e-15 84.7 219 31.1
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 1.3e-14 84.3 241 32.0
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.7e-14 84.0 228 34.6
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 3.7e-14 82.8 217 33.2
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 6.4e-14 82.0 233 30.0
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 6.4e-14 82.0 199 34.2
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 8.3e-14 81.6 216 31.5
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 8.3e-14 81.6 225 33.8
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 8.3e-14 81.6 209 35.9
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 1.1e-13 81.3 213 34.3
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 1.1e-13 81.3 213 34.3
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 2.4e-13 80.1 216 31.5
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 2.4e-13 80.1 221 31.2
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 3.2e-13 79.7 129 41.1
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.2e-13 79.7 215 31.6
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 4.1e-13 79.3 217 31.8
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 4.1e-13 79.3 216 30.6
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 5.4e-13 79.0 223 32.7
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 5.4e-13 79.0 225 31.1
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 9.2e-13 78.2 215 30.7
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 2.1e-12 77.0 243 32.9
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 2.1e-12 77.0 210 26.7
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 2.1e-12 77.0 211 31.3
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 2.1e-12 77.0 217 31.8
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 2.7e-12 76.6 219 28.3
Nitab4.5_0004471g0140 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.7e-12 76.6 90 45.6
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.0e-12 75.5 105 50.5
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 6.0e-12 75.5 233 31.8
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.7e-11 73.9 222 28.4
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 3.9e-11 72.8 247 29.6
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 1.1e-10 71.2 150 32.7
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 1.5e-10 70.9 145 35.9
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 1.5e-10 70.9 223 31.4
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.5e-10 70.9 184 32.1
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.3e-10 69.3 220 30.0
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 1.2e-09 67.8 215 30.2
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 2.8e-09 66.6 220 29.5
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 4.7e-09 65.9 220 31.4
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 6.2e-09 65.5 213 30.5
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 8.1e-09 65.1 215 29.8
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.4e-08 64.3 217 31.8
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 1.4e-08 64.3 221 29.4
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.8e-08 63.9 216 31.0
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 8.9e-08 61.6 215 30.7
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 1.5e-07 60.8 221 27.6
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 1.5e-07 60.8 194 31.4
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 2.0e-07 60.5 230 30.0
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 1.7e-06 57.4 225 28.0
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 4.9e-06 55.8 218 33.0


User provided reference genes

Program Settings