Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 1.7e-129 466.1 243 100.0
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.7e-129 466.1 243 100.0
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 2.9e-121 438.7 243 95.1
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 8.9e-115 417.2 242 86.8
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.5e-114 416.4 218 99.5
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.9e-112 409.5 235 87.7
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 7.1e-112 407.5 242 85.5
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.1e-111 406.0 234 88.9
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.7e-111 405.6 243 84.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 6.0e-111 404.4 235 85.5
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.0e-110 403.7 235 86.0
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 6.6e-110 401.0 235 85.5
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.1e-109 400.2 234 85.9
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.9e-109 399.4 235 86.0
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 5.6e-109 397.9 235 85.1
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.6e-108 396.4 235 84.7
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 3.6e-108 395.2 235 84.3
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 8.1e-108 394.0 234 83.8
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 8.1e-108 394.0 239 82.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.1e-107 393.7 235 83.0
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.4e-107 393.3 242 82.2
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.4e-107 393.3 224 93.3
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.4e-107 392.5 234 84.6
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 2.4e-107 392.5 234 84.2
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 2.4e-107 392.5 234 83.8
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 3.1e-107 392.1 236 82.6
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-107 392.1 235 83.8
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.1e-107 392.1 234 84.2
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.8e-107 391.0 235 83.8
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.8e-107 391.0 235 83.8
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 6.8e-107 391.0 234 83.3
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 6.8e-107 391.0 234 83.3
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 6.8e-107 391.0 235 83.4
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 6.8e-107 391.0 234 83.3
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 8.9e-107 390.6 236 83.1
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 8.9e-107 390.6 235 83.0
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.2e-106 390.2 234 82.9
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-106 390.2 235 83.4
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-106 390.2 235 83.4
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.5e-106 389.8 233 84.1
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 2.0e-106 389.4 233 84.1
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 2.0e-106 389.4 235 83.0
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.6e-106 389.0 235 83.0
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 2.6e-106 389.0 235 83.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 3.4e-106 388.7 234 83.3
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 4.4e-106 388.3 235 82.6
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 5.8e-106 387.9 239 81.6
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 7.6e-106 387.5 235 82.6
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 7.6e-106 387.5 233 83.3
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 9.9e-106 387.1 233 83.3
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 9.9e-106 387.1 234 82.9
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 9.9e-106 387.1 234 82.5
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.3e-105 386.7 233 83.3
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.3e-105 386.7 236 81.8
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-105 386.7 234 83.3
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.7e-105 386.3 233 83.3
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.7e-105 386.3 233 83.3
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.7e-105 386.3 233 83.3
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.7e-105 386.3 233 83.3
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 1.7e-105 386.3 239 81.2
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.7e-105 386.3 235 81.7
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.7e-105 386.3 235 81.7
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 2.2e-105 386.0 233 83.3
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.2e-105 386.0 235 83.8
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 2.9e-105 385.6 236 81.4
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 2.9e-105 385.6 235 81.3
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.8e-105 385.2 235 82.1
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 3.8e-105 385.2 239 81.6
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 3.8e-105 385.2 235 82.1
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 3.8e-105 385.2 234 82.1
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 4.9e-105 384.8 235 81.7
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 6.4e-105 384.4 235 81.7
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 8.4e-105 384.0 215 94.9
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.1e-104 383.6 233 82.4
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.1e-104 383.6 233 82.4
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.9e-104 382.9 235 81.3
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 5.4e-104 381.3 239 79.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 5.4e-104 381.3 240 80.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 7.1e-104 380.9 235 79.6
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 7.1e-104 380.9 233 82.8
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 7.1e-104 380.9 234 80.3
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 9.2e-104 380.6 241 79.3
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 1.6e-103 379.8 233 81.1
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 1.6e-103 379.8 233 81.1
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 1.6e-103 379.8 233 81.1
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.6e-103 379.8 242 78.5
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 2.7e-103 379.0 234 81.2
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 4.6e-103 378.3 235 83.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 7.8e-103 377.5 244 77.5
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.3e-102 376.7 239 82.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 5.1e-102 374.8 218 86.2
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 5.1e-102 374.8 255 75.7
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 6.6e-102 374.4 235 80.0
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.1e-101 373.6 230 83.0
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.9e-101 372.9 233 82.4
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.5e-101 372.5 261 74.3
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 9.6e-101 370.5 235 77.9
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 9.6e-101 370.5 232 79.7
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.6e-100 369.8 233 78.5
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 6.2e-100 367.9 219 84.9
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 3.1e-99 365.5 232 80.2
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 9.0e-99 364.0 237 79.3
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.6e-98 360.9 235 77.4
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 2.2e-97 359.4 233 76.0
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.2e-97 359.4 233 77.7
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.4e-96 356.7 235 76.6
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 3.2e-96 355.5 234 78.6
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 3.0e-94 349.0 241 73.4
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.6e-92 342.0 234 73.9
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 6.2e-92 341.3 232 71.6
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.8e-91 339.7 232 72.0
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 5.3e-91 338.2 219 79.0
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 6.9e-91 337.8 234 71.4
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.5e-90 336.7 259 69.9
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 4.5e-90 335.1 235 74.5
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.3e-89 333.6 236 68.6
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.7e-89 333.2 219 78.5
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 6.4e-89 331.3 244 70.9
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 8.4e-89 330.9 228 76.3
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.0e-86 323.9 239 68.2
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.3e-84 317.0 244 66.0
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 7.6e-82 307.8 182 86.3
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.7e-79 299.3 186 80.6
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.3e-76 290.4 233 64.8
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.3e-76 290.4 233 64.8
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.1e-76 289.7 203 74.9
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.7e-73 280.0 152 92.8
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.4e-72 276.9 175 80.0
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 3.5e-71 272.3 177 79.1
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.0e-70 270.8 175 78.9
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.9e-70 268.9 197 71.6
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 5.3e-67 258.5 182 70.9
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.1e-63 246.5 167 74.3
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.3e-62 243.0 176 72.7
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.1e-59 232.3 167 71.9
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.5e-58 228.8 167 71.3
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 6.3e-52 208.4 110 88.2
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.1e-51 204.5 113 85.0
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 7.2e-48 194.9 111 82.0
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.4e-43 180.6 123 75.6
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.1e-43 177.9 123 74.0
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.9e-40 170.2 114 76.3
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.9e-33 146.4 121 67.8
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.7e-31 139.8 118 68.6
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 4.7e-31 139.0 117 66.7
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.8e-30 135.2 88 76.1
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.3e-24 116.3 61 86.9
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.0e-22 111.3 86 62.8
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.3e-22 110.2 88 65.9
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 3.2e-19 99.8 79 70.9
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 6.1e-15 85.5 73 67.1
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.7e-09 67.4 191 26.7


User provided reference genes

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