Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 0.0e+00 1325.5 663 100.0
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 0.0e+00 1244.6 663 93.8
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 0.0e+00 1186.8 663 89.1
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 0.0e+00 1131.3 573 98.6
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 0.0e+00 1097.8 667 84.1
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 0.0e+00 1095.5 665 84.7
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 8.2e-288 993.4 664 78.8
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 8.9e-234 813.9 664 64.8
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.7e-232 809.7 680 62.4
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 8.4e-232 807.4 689 62.7
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 5.4e-231 804.7 684 62.3
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 3.5e-230 802.0 689 62.3
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.1e-228 797.0 724 59.8
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 5.6e-228 794.7 679 61.7
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 3.1e-226 788.9 687 61.4
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 4.0e-226 788.5 667 60.4
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 5.2e-226 788.1 678 61.8
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 8.9e-226 787.3 670 62.4
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 1.3e-224 783.5 665 62.0
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 4.2e-223 778.5 661 62.3
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 5.4e-223 778.1 679 61.3
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 6.0e-222 774.6 673 60.5
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 2.3e-221 772.7 660 62.3
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 1.5e-220 770.0 672 59.4
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 1.5e-220 770.0 671 61.7
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 1.3e-219 766.9 673 60.0
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 6.2e-219 764.6 663 61.4
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 8.1e-219 764.2 672 60.1
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 2.4e-218 762.7 660 61.4
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 2.4e-218 762.7 631 63.7
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 9.0e-218 760.8 663 61.1
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.2e-217 760.4 660 61.2
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 2.6e-217 759.2 666 61.6
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 3.4e-217 758.8 663 61.4
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 9.9e-217 757.3 675 60.7
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 9.9e-217 757.3 662 60.1
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 3.8e-216 755.4 663 60.8
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 4.9e-216 755.0 661 60.5
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 3.2e-215 752.3 663 59.6
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 3.2e-215 752.3 662 61.5
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 7.1e-215 751.1 663 59.4
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 1.2e-214 750.4 662 61.6
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.7e-214 749.2 686 58.0
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 1.0e-213 747.3 661 61.1
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 1.0e-213 747.3 714 57.8
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 3.0e-213 745.7 674 60.4
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 8.7e-213 744.2 670 59.6
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 8.7e-213 744.2 686 58.9
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.1e-212 743.8 698 57.0
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 1.5e-212 743.4 655 61.1
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 1.5e-212 743.4 663 60.0
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.9e-212 743.0 655 60.9
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 1.9e-212 743.0 657 61.3
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 9.6e-212 740.7 677 58.3
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 2.8e-211 739.2 655 60.5
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 3.6e-211 738.8 663 58.4
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 4.8e-211 738.4 625 64.0
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 6.2e-211 738.0 697 58.5
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 6.2e-211 738.0 665 60.6
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 1.8e-210 736.5 635 60.6
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 4.0e-210 735.3 688 58.0
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 1.2e-209 733.8 662 60.9
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 2.0e-209 733.0 658 60.5
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 9.9e-209 730.7 680 58.8
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 2.2e-208 729.6 652 60.1
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 2.9e-208 729.2 665 58.0
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.4e-207 726.9 658 59.6
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 7.1e-207 724.5 658 60.0
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.2e-206 723.8 663 59.1
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 1.6e-206 723.4 546 67.2
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 3.5e-206 722.2 660 59.2
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 3.0e-205 719.2 665 57.4
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 7.6e-201 704.5 659 59.3
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 1.7e-200 703.4 663 57.2
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 2.9e-200 702.6 745 53.4
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 4.9e-200 701.8 676 58.4
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 6.5e-200 701.4 650 58.2
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 3.5e-198 695.7 643 58.2
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 1.1e-191 674.1 675 56.6
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 3.1e-186 656.0 644 55.6
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 4.5e-185 652.1 627 56.1
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 2.5e-183 646.4 658 54.3
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 1.4e-181 640.6 646 53.1
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 6.5e-168 595.1 553 57.0
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 1.7e-163 580.5 670 51.2
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 4.5e-161 572.4 691 48.6
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.8e-157 560.5 419 69.5
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 2.8e-155 553.1 654 48.2
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 6.3e-155 552.0 631 48.2
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 4.7e-150 535.8 434 63.1
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 8.0e-150 535.0 447 64.2
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 7.5e-140 501.9 474 57.4
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 7.0e-138 495.4 395 65.6
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 3.1e-133 479.9 647 45.1
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 3.4e-124 449.9 280 79.3
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 2.2e-123 447.2 504 47.0
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.8e-110 403.7 468 52.4
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 1.4e-101 374.8 469 47.3
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 1.1e-98 365.2 566 40.5
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.8e-96 357.8 254 73.6
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.6e-94 351.3 261 69.7
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.7e-89 334.0 257 69.3
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 3.0e-88 330.5 562 37.4
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 4.3e-87 326.6 193 82.9
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 1.2e-84 318.5 391 46.3
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 4.6e-81 306.6 354 52.0
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 2.5e-79 300.8 441 40.6
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 4.8e-78 296.6 187 77.5
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 3.4e-76 290.4 655 35.0
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 7.7e-76 289.3 350 49.1
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 3.8e-75 287.0 350 49.1
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 1.9e-74 284.6 314 52.5
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 7.9e-73 279.3 164 82.9
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.4e-72 278.5 181 75.1
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 1.1e-71 275.4 185 76.2
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 3.8e-67 260.4 363 41.6
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 3.3e-63 247.3 152 77.6
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.3e-62 245.4 348 42.5
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 4.4e-55 220.3 128 82.0
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 4.5e-52 210.3 462 33.1
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 8.8e-40 169.5 211 46.0
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 9.8e-39 166.0 216 48.1
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 7.5e-31 139.8 110 64.5
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 1.7e-30 138.7 226 38.1
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 2.3e-27 128.3 149 54.4
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.1e-26 125.9 110 57.3
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 1.5e-26 125.6 82 76.8
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 2.4e-21 108.2 101 54.5
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 1.0e-19 102.8 58 84.5
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.1e-18 99.4 110 48.2
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 4.4e-15 87.4 223 29.1
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 6.4e-14 83.6 201 32.8
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 3.2e-13 81.3 70 52.9
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 7.0e-13 80.1 53 81.1
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 6.8e-08 63.5 70 48.6
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 2.6e-07 61.6 52 55.8


User provided reference genes

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