Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 0.0e+00 2978.7 1524 100.0
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 0.0e+00 2871.6 1524 96.5
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 0.0e+00 2159.8 1447 78.7
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 0.0e+00 1480.7 1519 56.3
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 0.0e+00 1433.3 1526 54.7
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 0.0e+00 1418.7 1523 54.1
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.7e-167 593.2 1568 30.7
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 9.7e-167 592.4 1546 31.3
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 4.2e-162 577.0 1555 30.8
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 2.2e-158 564.7 1541 31.8
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 4.5e-156 557.0 1590 29.4
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 1.6e-153 548.5 1620 29.1
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 2.7e-153 547.7 1674 29.2
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 5.7e-151 540.0 1526 30.0
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 9.8e-151 539.3 1552 31.1
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 2.8e-150 537.7 1565 30.7
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 5.0e-147 526.9 1530 30.1
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 3.6e-145 520.8 1528 30.8
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 2.6e-143 514.6 1529 30.3
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 4.1e-141 507.3 1563 30.2
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 1.0e-139 502.7 1545 30.6
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 1.1e-138 499.2 1532 30.5
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 8.0e-137 493.0 1525 30.1
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 5.2e-136 490.3 1586 28.9
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 8.3e-134 483.0 1533 29.2
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 9.2e-133 479.6 1564 29.6
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.2e-132 479.2 1554 28.9
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 1.7e-131 475.3 1547 29.0
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 6.6e-131 473.4 1535 29.8
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.4e-128 465.7 1634 28.4
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 4.0e-128 464.2 1550 28.6
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 1.2e-127 462.6 1519 28.8
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.3e-126 459.1 1547 29.5
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 1.7e-126 458.8 1563 28.6
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 4.1e-125 454.1 1480 27.8
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 9.2e-125 453.0 1545 29.5
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.0e-123 449.5 1685 29.0
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.3e-123 449.1 1639 27.2
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 2.3e-123 448.4 1512 28.2
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 5.0e-123 447.2 1554 30.4
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.9e-122 445.3 1554 26.8
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 5.6e-122 443.7 1594 29.4
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 4.7e-121 440.7 1533 29.5
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 1.4e-120 439.1 1637 27.1
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 1.4e-120 439.1 1567 28.5
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 2.3e-120 438.3 1541 29.5
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 8.9e-120 436.4 1585 26.2
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 1.5e-119 435.6 1526 27.0
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.3e-118 432.6 1532 29.4
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 8.3e-118 429.9 1517 28.3
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 5.4e-117 427.2 1628 26.8
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 7.1e-117 426.8 1525 27.5
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 1.0e-115 422.9 1543 28.4
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 1.0e-115 422.9 1543 28.4
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 1.2e-113 416.0 1531 25.7
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 3.6e-113 414.5 1542 28.3
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 1.1e-112 412.9 1544 27.9
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 1.4e-112 412.5 1531 27.6
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 2.3e-112 411.8 1540 26.9
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 2.6e-111 408.3 1533 26.7
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 3.4e-111 407.9 1574 26.7
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 9.9e-111 406.4 1540 27.2
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 1.7e-110 405.6 1635 27.5
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 1.7e-110 405.6 1516 27.3
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 1.4e-109 402.5 1535 27.4
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.4e-109 402.5 898 33.9
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 3.2e-109 401.4 1511 27.3
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 1.7e-107 395.6 1549 26.1
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 2.3e-107 395.2 1556 26.5
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 1.1e-106 392.9 1528 26.6
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 4.3e-106 391.0 1548 27.1
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 2.8e-105 388.3 1436 27.9
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 3.6e-105 387.9 1523 26.3
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.6e-105 387.9 940 32.9
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 6.2e-105 387.1 1529 27.4
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 9.3e-101 373.2 1517 25.7
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 4.6e-100 370.9 1532 25.9
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 2.3e-99 368.6 1554 26.2
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 6.6e-99 367.1 471 42.5
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 4.0e-96 357.8 439 44.4
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 7.6e-95 353.6 1111 29.3
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 1.9e-93 349.0 820 33.4
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 3.3e-90 338.2 455 42.6
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 1.6e-89 335.9 1495 25.3
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 1.8e-88 332.4 1563 26.2
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 5.6e-82 310.8 438 39.5
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 5.3e-80 304.3 918 26.6
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.1e-76 292.4 900 30.9
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.1e-76 292.4 347 46.7
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.7e-76 292.0 900 31.0
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 1.9e-74 285.8 1156 26.6
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 8.2e-73 280.4 1337 24.7
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 1.0e-70 273.5 410 36.1
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 6.5e-70 270.8 812 29.4
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.6e-68 266.2 257 50.6
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 1.8e-67 262.7 1524 23.6
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 7.4e-66 257.3 266 48.1
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 7.4e-66 257.3 1488 24.6
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 1.0e-62 246.9 426 34.5
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.5e-61 242.3 214 61.2
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 1.6e-60 239.6 1310 25.0
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 3.6e-60 238.4 216 60.6
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.4e-59 236.5 215 60.0
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 2.0e-58 232.6 286 47.9
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 3.7e-57 228.4 438 35.2
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.3e-51 209.1 261 49.0
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 3.0e-51 208.8 407 37.6
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 8.2e-49 200.7 179 55.9
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 1.0e-43 183.7 596 26.3
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 1.4e-43 183.3 109 77.1
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.5e-37 162.5 106 71.7
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 6.1e-36 157.9 115 66.1
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 8.3e-33 147.5 141 51.1
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 7.0e-32 144.4 212 35.8
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.2e-29 135.6 147 46.9
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.8e-28 132.5 90 71.1
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 2.2e-25 122.9 389 29.6
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 6.3e-25 121.3 82 68.3
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.4e-24 119.4 173 41.6
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 7.8e-23 114.4 76 71.1
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 5.6e-21 108.2 152 40.1
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 4.0e-19 102.1 68 67.6
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 1.3e-17 97.1 99 53.5
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.3e-17 97.1 68 64.7
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.7e-17 96.7 74 59.5
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.0e-14 85.9 71 57.7
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 1.2e-10 73.9 134 30.6
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 1.5e-10 73.6 140 32.9
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 2.4e-08 66.2 123 28.5
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 7.0e-08 64.7 64 46.9
Oeu028721.1 Olea europaea HOM05D004942 ORTHO05D005687 3.5e-07 62.4 109 40.4
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 4.6e-07 62.0 128 36.7
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 5.0e-06 58.5 182 26.9


User provided reference genes

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