Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.1e-110 402.5 225 100.0
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 5.6e-95 351.3 209 95.7
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.6e-54 215.7 168 73.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 3.6e-54 215.7 168 73.2
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.4e-53 213.0 168 72.0
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.0e-53 212.2 168 71.4
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 4.0e-53 212.2 168 71.4
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 5.8e-52 208.4 167 69.5
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 3.8e-51 205.7 180 67.2
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 6.4e-51 204.9 170 66.5
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 4.2e-50 202.2 167 66.5
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 3.0e-48 196.1 173 67.6
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 3.9e-48 195.7 169 64.5
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 5.1e-48 195.3 205 57.1
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.5e-47 193.7 168 65.5
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 5.6e-47 191.8 137 75.2
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 9.6e-47 191.0 168 64.9
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.3e-46 190.7 165 65.5
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.6e-46 190.3 165 64.2
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 2.1e-46 189.9 164 64.6
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.1e-45 186.0 164 65.9
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 9.0e-45 184.5 166 61.4
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 5.8e-44 181.8 168 61.3
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 5.8e-44 181.8 165 61.8
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.6e-44 181.4 168 61.3
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.6e-44 181.4 168 61.3
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 4.9e-43 178.7 168 61.9
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.9e-43 178.7 168 59.5
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 2.5e-42 176.4 165 61.8
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.5e-42 176.4 166 60.8
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 3.2e-42 176.0 166 60.8
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 5.5e-42 175.3 169 59.8
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.2e-41 174.1 165 61.2
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.6e-41 173.7 166 59.6
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.1e-41 173.3 168 60.1
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 6.7e-40 168.3 163 60.7
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.9e-39 166.8 165 60.6
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.5e-39 166.4 165 58.2
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 4.3e-39 165.6 168 58.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 7.4e-39 164.9 172 55.8
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 7.4e-39 164.9 161 57.8
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 9.6e-39 164.5 169 57.4
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 3.7e-38 162.5 168 58.3
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 8.2e-38 161.4 166 57.8
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 8.2e-38 161.4 165 58.8
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 8.2e-38 161.4 164 57.3
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.1e-37 161.0 163 58.3
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.4e-37 160.6 163 57.7
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 1.8e-37 160.2 163 57.1
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.4e-37 159.8 224 47.3
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.5e-36 157.1 200 49.5
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.0e-36 156.8 143 64.3
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 2.6e-36 156.4 143 63.6
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 2.6e-36 156.4 164 54.9
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 7.6e-36 154.8 165 53.9
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 7.6e-36 154.8 249 43.4
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 2.9e-35 152.9 169 53.8
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 3.2e-34 149.4 130 66.2
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 4.2e-34 149.1 168 53.6
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 9.3e-34 147.9 167 54.5
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 9.3e-34 147.9 168 53.6
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 2.1e-33 146.7 168 55.4
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 2.1e-33 146.7 168 54.8
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.0e-32 144.4 168 51.8
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.3e-32 144.1 163 56.4
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.8e-32 143.7 169 52.1
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 6.7e-32 141.7 158 53.8
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 6.7e-32 141.7 169 52.1
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.1e-31 141.0 168 51.8
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 9.7e-31 137.9 165 52.1
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 9.7e-31 137.9 162 53.7
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.3e-30 137.5 88 81.8
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 1.6e-30 137.1 162 53.1
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 2.8e-30 136.3 168 53.0
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 3.7e-30 136.0 168 50.0
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 8.2e-30 134.8 166 48.8
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 8.2e-30 134.8 163 52.8
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 8.2e-30 134.8 167 50.9
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.1e-29 134.4 191 46.1
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.1e-29 134.4 164 53.0
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.4e-29 134.0 161 52.2
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.4e-29 133.3 168 51.8
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.4e-29 133.3 137 56.2
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 3.1e-29 132.9 169 48.5
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 6.9e-29 131.7 136 57.4
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.4e-28 129.4 88 75.0
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 5.9e-28 128.6 168 49.4
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 5.9e-28 128.6 168 49.4
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 7.7e-28 128.3 181 45.3
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 2.2e-27 126.7 166 50.0
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 2.2e-27 126.7 88 72.7
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 2.9e-27 126.3 166 51.2
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 3.8e-27 125.9 162 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.4e-26 124.0 166 48.8
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.4e-26 124.0 113 60.2
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 3.2e-26 122.9 168 49.4
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 7.2e-26 121.7 177 46.3
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 9.4e-26 121.3 162 46.9
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 3.0e-24 116.3 99 61.6
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 3.9e-24 115.9 168 47.0
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 3.9e-24 115.9 116 58.6
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 2.0e-23 113.6 162 48.1
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.3e-23 112.5 169 46.7
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 7.4e-23 111.7 168 46.4
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.3e-22 110.9 198 44.4
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.7e-22 110.5 165 45.5
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 3.7e-22 109.4 161 47.2
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 8.2e-22 108.2 168 44.6
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.4e-21 107.5 163 44.2
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.8e-21 107.1 164 45.7
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 6.9e-21 105.1 168 42.9
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 9.1e-21 104.8 168 42.9
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 4.5e-20 102.4 164 44.5
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 4.5e-20 102.4 164 44.5
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.3e-19 100.9 163 39.9
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.3e-19 100.9 163 44.8
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.7e-19 100.5 169 43.2
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.2e-19 100.1 95 55.8
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.2e-19 100.1 169 42.6
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-18 97.8 163 44.2
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-18 97.8 166 44.0
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.5e-18 96.7 169 42.0
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 4.2e-18 95.9 159 45.3
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 4.2e-18 95.9 162 42.6
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 7.2e-18 95.1 72 69.4
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 7.2e-18 95.1 169 41.4
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 2.7e-17 93.2 165 42.4
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 3.6e-17 92.8 166 41.0
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 3.9e-16 89.4 166 40.4
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 3.9e-16 89.4 166 40.4
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 3.9e-16 89.4 166 41.0
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 6.7e-16 88.6 158 40.5
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 3.3e-15 86.3 165 40.0
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 3.7e-14 82.8 166 39.2
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 3.7e-14 82.8 166 39.2
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 3.7e-14 82.8 165 38.2
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 4.8e-14 82.4 154 41.6
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.3e-14 82.0 162 35.2
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 4.5e-12 75.9 101 46.5
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 7.2e-10 68.6 127 39.4
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 8.8e-08 61.6 73 56.2
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.2e-06 57.0 51 58.8


User provided reference genes

Program Settings