Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g011830.4 Solanum lycopersicum HOM05D003025 ORTHO05D003305 3.4e-173 611.7 339 100.0
Sopen05g006590 Solanum pennellii HOM05D003025 ORTHO05D003305 7.4e-168 594.0 334 98.5
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 2.8e-135 485.7 351 80.6
Nitab4.5_0009153g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 5.8e-120 434.9 337 76.0
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 6.4e-95 351.7 342 66.1
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 8.8e-60 235.0 344 42.2
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 4.3e-59 232.6 343 43.1
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 5.3e-57 225.7 344 41.6
Peaxi162Scf00026g00314 Petunia axillaris HOM05D003025 ORTHO05D003305 3.4e-56 223.0 344 41.0
Nitab4.5_0003339g0090 Nicotiana tabacum HOM05D003025 ORTHO05D003305 3.1e-49 199.9 344 39.8
Nitab4.5_0001196g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 4.5e-48 196.1 344 39.0
Nitab4.5_0002491g0030 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.0e-47 194.9 345 39.1
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 2.8e-42 176.8 316 38.0
PGSC0003DMG400025718 Solanum tuberosum HOM05D003025 ORTHO05D003305 3.2e-38 163.3 109 78.0
Sopen01g005700 Solanum pennellii HOM05D003025 ORTHO05D051140 2.8e-18 97.1 333 28.2
Solyc01g010140.1 Solanum lycopersicum HOM05D003025 ORTHO05D051140 9.2e-17 92.0 333 27.6
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 3.9e-15 86.7 236 30.1
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 8.0e-13 79.0 102 45.1
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 1.4e-12 78.2 154 37.0
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 1.4e-12 78.2 123 36.6
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 8.9e-12 75.5 124 38.7
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 1.5e-11 74.7 152 36.2
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 2.0e-11 74.3 289 28.7
MSTRG.780 Avicennia marina HOM05D003025 ORTHO05D003305 3.4e-11 73.6 74 50.0
Haze_11858 Corylus avellana HOM05D003025 ORTHO05D003305 7.5e-11 72.4 201 30.3
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 7.5e-11 72.4 95 42.1
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.3e-10 71.6 141 32.6
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 4.9e-10 69.7 117 38.5
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 4.9e-10 69.7 137 37.2
Cpa.g.sc1.169 Carica papaya HOM05D003025 ORTHO05D003305 1.1e-09 68.6 151 33.8
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.1e-09 68.6 123 36.6
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 1.1e-09 68.6 142 34.5
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 1.4e-09 68.2 148 34.5
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 1.4e-09 68.2 164 32.3
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 2.4e-09 67.4 103 38.8
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 2.4e-09 67.4 165 29.7
Actinidia13406 Actinidia chinensis HOM05D003025 ORTHO05D003305 5.4e-09 66.2 79 38.0
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 5.4e-09 66.2 112 35.7
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 9.2e-09 65.5 86 40.7
RcHm_v2.0_Chr4g0437341 Rosa chinensis HOM05D003025 ORTHO05D003305 9.2e-09 65.5 73 43.8
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 9.2e-09 65.5 128 34.4
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 1.6e-08 64.7 94 41.5
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 2.0e-08 64.3 115 37.4
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 2.0e-08 64.3 98 38.8
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 2.0e-08 64.3 53 56.6
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 3.5e-08 63.5 154 35.7
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 4.6e-08 63.2 97 39.2
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 6.0e-08 62.8 93 37.6
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 7.8e-08 62.4 91 38.5
FAN07G1412 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.0e-07 62.0 56 46.4
FAN22G0063 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.0e-07 62.0 56 46.4
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 1.3e-07 61.6 146 32.9
FAN17G1716 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.7e-07 61.2 60 45.0
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.7e-07 61.2 134 32.8
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.7e-07 61.2 88 38.6
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.7e-07 61.2 94 40.4
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 1.7e-07 61.2 155 31.0
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.3e-07 60.8 148 33.1
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.3e-07 60.8 116 36.2
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 3.9e-07 60.1 115 33.0
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 5.0e-07 59.7 166 29.5
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 8.6e-07 58.9 100 36.0
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 1.1e-06 58.5 86 38.4
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.1e-06 58.5 70 44.3
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 1.5e-06 58.2 113 38.1
FvH4_4g29290 Fragaria vesca HOM05D003025 ORTHO05D003305 1.5e-06 58.2 89 32.6
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 1.5e-06 58.2 122 33.6
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 1.5e-06 58.2 125 30.4
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 1.9e-06 57.8 129 31.0
Ciclev10031644m.g Citrus clementina HOM05D003025 ORTHO05D003305 1.9e-06 57.8 79 48.1
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 1.9e-06 57.8 184 26.6
ECA246G4035 Erigeron canadensis HOM05D003025 ORTHO05D003305 1.9e-06 57.8 78 42.3
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 1.9e-06 57.8 91 35.2
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 2.5e-06 57.4 86 40.7
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 4.3e-06 56.6 68 45.6
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 4.3e-06 56.6 78 37.2
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 4.3e-06 56.6 104 34.6
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 5.6e-06 56.2 133 28.6
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 7.3e-06 55.8 160 31.9
Oeu055083.2 Olea europaea HOM05D003025 ORTHO05D003305 9.5e-06 55.5 64 43.8


User provided reference genes

Program Settings