Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.5e-164 582.8 297 100.0
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 4.4e-164 581.3 297 99.7
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.0e-141 506.9 296 90.2
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.2e-58 229.2 365 47.9
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 1.6e-57 227.3 354 48.0
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.7e-57 226.5 366 47.0
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.1e-53 214.5 322 47.8
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 4.1e-53 212.6 322 47.8
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 9.1e-53 211.5 330 46.7
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.0e-44 183.7 293 43.3
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.0e-44 183.7 293 43.3
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 6.1e-41 172.2 353 40.5
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.8e-38 162.5 327 40.4
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.4e-37 161.0 244 48.0
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 4.5e-36 156.0 361 36.3
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 5.9e-36 155.6 344 38.1
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 6.5e-35 152.1 340 34.7
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 6.5e-35 152.1 344 37.5
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.1e-34 151.4 346 37.0
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.1e-34 151.4 333 39.0
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.9e-34 150.6 394 34.3
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.0e-32 144.8 339 38.6
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.0e-32 144.8 339 38.6
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 3.0e-32 143.3 335 38.8
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.0e-31 140.6 387 34.4
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 5.7e-31 139.0 371 33.7
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 4.8e-30 136.0 398 33.9
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 6.3e-30 135.6 391 34.0
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-29 134.8 394 33.2
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.1e-29 134.8 396 33.6
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.8e-29 134.0 406 33.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.8e-29 134.0 396 33.3
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.8e-29 134.0 367 35.1
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 2.4e-29 133.7 361 34.1
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.4e-29 133.7 379 32.7
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 9.1e-29 131.7 353 35.1
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-28 131.3 351 35.9
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.6e-28 131.0 393 32.1
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 3.5e-28 129.8 341 35.2
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 3.5e-28 129.8 341 35.2
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 5.9e-28 129.0 411 32.1
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.3e-27 127.9 387 33.6
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.3e-27 127.9 404 32.4
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.7e-27 127.5 353 36.3
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.9e-27 126.7 354 36.2
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 5.0e-27 125.9 304 36.8
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 5.0e-27 125.9 377 34.0
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 6.6e-27 125.6 392 33.7
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 6.6e-27 125.6 396 31.6
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 6.6e-27 125.6 388 32.7
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 8.6e-27 125.2 212 46.2
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.1e-26 124.8 369 32.8
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.5e-26 124.4 380 33.2
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.5e-26 123.6 331 35.3
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 4.2e-26 122.9 393 31.6
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 5.5e-26 122.5 307 36.2
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 5.5e-26 122.5 307 36.2
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.5e-26 122.5 347 33.7
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.5e-26 122.5 347 33.7
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 9.5e-26 121.7 397 32.2
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.2e-25 121.3 393 33.3
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-25 120.9 346 34.1
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.6e-25 120.9 371 33.4
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 2.1e-25 120.6 332 37.3
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.8e-25 120.2 371 34.2
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.8e-25 120.2 371 34.2
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 4.7e-25 119.4 397 31.2
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.0e-24 118.2 288 38.9
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.0e-24 118.2 362 31.5
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.0e-24 118.2 363 31.7
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.0e-24 118.2 373 33.8
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.4e-24 117.9 345 34.5
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.4e-24 117.9 315 34.9
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 4.0e-24 116.3 344 33.4
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 8.9e-24 115.2 334 34.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.2e-23 114.8 343 32.4
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.5e-23 114.4 414 30.4
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.5e-23 114.4 369 32.5
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 4.4e-23 112.8 327 31.5
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 5.7e-23 112.5 379 33.2
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.3e-22 111.3 355 33.2
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.7e-22 110.9 227 37.9
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.7e-22 110.9 385 32.5
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 2.2e-22 110.5 203 40.9
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 2.2e-22 110.5 321 32.1
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 2.8e-22 110.2 379 31.7
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 3.7e-22 109.8 228 38.2
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.7e-22 109.8 228 38.2
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.7e-22 109.8 228 38.2
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.7e-22 109.8 228 38.2
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 8.3e-22 108.6 319 31.3
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.1e-21 108.2 335 33.1
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.4e-21 107.1 241 36.5
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.4e-21 105.9 307 34.9
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 5.4e-21 105.9 349 32.4
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 1.2e-20 104.8 244 34.0
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.6e-20 104.4 400 31.8
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 2.0e-20 104.0 385 31.7
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 2.7e-20 103.6 323 31.0
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 3.5e-20 103.2 301 34.6
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.0e-19 101.7 371 31.8
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-19 101.3 208 40.9
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 2.3e-19 100.5 402 29.1
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 3.9e-19 99.8 208 40.4
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 5.0e-19 99.4 225 36.9
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.1e-18 98.2 238 36.1
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 1.9e-18 97.4 375 30.4
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-18 97.4 208 39.9
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 2.5e-18 97.1 218 36.7
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 2.5e-18 97.1 356 31.5
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 3.3e-18 96.7 173 42.8
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 5.6e-18 95.9 211 35.1
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 5.6e-18 95.9 211 35.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 9.5e-18 95.1 363 33.3
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.1e-17 94.0 335 30.4
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 4.7e-17 92.8 225 36.4
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.0e-16 91.7 214 37.4
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 1.8e-16 90.9 416 27.2
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 5.2e-16 89.4 195 36.9
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.2e-15 88.2 209 38.8
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.5e-15 87.8 211 38.4
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.5e-15 87.8 262 34.0
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 3.4e-15 86.7 333 29.4
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 5.8e-15 85.9 254 34.3
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 5.8e-15 85.9 205 35.1
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 9.8e-15 85.1 358 29.9
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 3.7e-14 83.2 223 37.2
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 4.9e-14 82.8 356 31.2
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 4.9e-14 82.8 207 38.2
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 4.9e-14 82.8 207 38.2
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 4.9e-14 82.8 207 38.2
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 3.2e-13 80.1 251 33.5
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 5.4e-13 79.3 223 36.3
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 5.4e-13 79.3 235 31.1
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 7.0e-13 79.0 187 38.5
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 9.2e-13 78.6 211 33.6
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.2e-12 78.2 109 45.9
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.0e-11 75.1 180 35.6
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 1.0e-11 75.1 418 25.8
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.3e-11 74.7 108 41.7
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.7e-11 74.3 290 30.7
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.3e-11 73.9 333 27.3
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.9e-10 70.9 203 35.5
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 7.3e-10 68.9 358 27.1
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.6e-09 67.8 272 26.8
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 4.7e-09 66.2 382 25.1
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 9.8e-07 58.5 209 31.1
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-06 57.8 230 27.4
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 1.7e-06 57.8 167 29.3
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 6.4e-06 55.8 235 28.1


User provided reference genes

Program Settings