Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 1.1e-78 296.6 152 100.0
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 5.5e-30 134.8 154 45.5
Peaxi162Scf00198g00024 Petunia axillaris HOM05D007408 ORTHO05D009325 4.7e-29 131.7 119 63.9
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 1.5e-27 126.7 158 46.2
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 4.4e-27 125.2 150 48.7
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 4.4e-27 125.2 150 48.7
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 8.3e-26 120.9 161 47.2
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 1.8e-25 119.8 161 44.7
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 2.7e-24 115.9 155 44.5
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 7.7e-24 114.4 158 46.2
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 3.2e-22 109.0 151 43.0
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 4.2e-22 108.6 118 49.2
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 6.8e-20 101.3 121 47.1
Nitab4.5_0010987g0020 Nicotiana tabacum HOM05D007408 ORTHO05D009325 1.5e-19 100.1 59 79.7
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 3.4e-19 99.0 123 50.4
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 9.8e-19 97.4 150 41.3
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 1.7e-18 96.7 128 40.6
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.4e-17 93.6 166 36.7
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 1.8e-17 93.2 172 35.5
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 3.1e-17 92.4 128 43.0
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 3.1e-17 92.4 118 47.5
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 5.4e-17 91.7 172 35.5
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 7.0e-17 91.3 130 40.8
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 7.0e-17 91.3 133 42.1
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 7.0e-17 91.3 125 48.0
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 1.2e-16 90.5 172 34.9
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.2e-16 90.5 127 44.9
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.2e-16 90.5 127 44.9
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.2e-16 90.5 127 44.9
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 1.6e-16 90.1 116 47.4
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.6e-16 90.1 149 37.6
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 2.0e-16 89.7 127 44.9
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 2.7e-16 89.4 115 49.6
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 2.7e-16 89.4 160 40.6
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 2.7e-16 89.4 128 43.8
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 2.7e-16 89.4 128 43.8
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 2.7e-16 89.4 152 41.4
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 2.7e-16 89.4 117 47.9
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 3.5e-16 89.0 174 39.1
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 3.5e-16 89.0 124 41.9
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 4.5e-16 88.6 118 44.9
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 4.5e-16 88.6 121 47.1
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 5.9e-16 88.2 125 48.0
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 7.8e-16 87.8 134 40.3
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.0e-15 87.4 129 39.5
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 1.0e-15 87.4 110 43.6
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 1.0e-15 87.4 110 43.6
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 1.0e-15 87.4 123 46.3
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.0e-15 87.4 111 44.1
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 1.0e-15 87.4 125 41.6
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 2.9e-15 85.9 128 39.1
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 3.8e-15 85.5 110 41.8
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 3.8e-15 85.5 110 41.8
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 3.8e-15 85.5 110 41.8
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 5.0e-15 85.1 115 46.1
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 5.0e-15 85.1 153 39.9
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 1.1e-14 84.0 121 43.0
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 1.5e-14 83.6 110 47.3
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.5e-14 83.6 131 41.2
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 3.3e-14 82.4 160 38.8
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 5.6e-14 81.6 118 43.2
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 5.6e-14 81.6 121 41.3
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 1.6e-13 80.1 149 40.3
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 2.1e-13 79.7 112 44.6
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 2.1e-13 79.7 126 41.3
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 1.0e-12 77.4 154 37.0
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 1.0e-12 77.4 128 40.6
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.4e-12 77.0 109 39.4
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 3.0e-12 75.9 124 36.3
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 5.2e-12 75.1 122 41.0
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 3.4e-11 72.4 118 40.7
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 7.5e-11 71.2 145 35.2
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 9.8e-11 70.9 109 39.4
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 9.8e-11 70.9 117 45.3
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 3.7e-10 68.9 188 31.4
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 4.9e-10 68.6 118 37.3
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 2.4e-09 66.2 103 40.8
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 5.4e-09 65.1 111 36.9
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 1.6e-08 63.5 128 32.8
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 2.0e-08 63.2 109 34.9
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 2.7e-08 62.8 128 32.8
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 4.6e-08 62.0 109 33.0
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 4.6e-08 62.0 74 51.4
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 5.9e-08 61.6 109 33.0
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 5.9e-08 61.6 109 33.0
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 5.9e-08 61.6 115 40.0
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.3e-07 60.5 112 34.8
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.7e-07 60.1 109 37.6
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 1.7e-07 60.1 109 32.1
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 1.7e-07 60.1 109 32.1
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.7e-07 60.1 109 34.9
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 5.0e-07 58.5 101 32.7
PSO063G0414 Papaver somniferum HOM05D007408 ORTHO05D009325 5.0e-07 58.5 154 35.7
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 5.0e-07 58.5 122 32.0
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 8.6e-07 57.8 109 33.0
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 8.6e-07 57.8 109 33.0
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-06 57.4 123 32.5
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 1.1e-06 57.4 109 33.0
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 1.5e-06 57.0 109 33.0
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 3.3e-06 55.8 121 33.1
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 3.3e-06 55.8 121 33.1
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 4.3e-06 55.5 109 33.0
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 5.6e-06 55.1 123 34.1
Lsat_1_v5_gn_8_37901 Lactuca sativa HOM05D007408 ORTHO05D009325 5.6e-06 55.1 111 37.8
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 7.3e-06 54.7 122 32.8
ECA233G1102 Erigeron canadensis HOM05D002818 ORTHO05D003244 7.3e-06 54.7 67 44.8
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 9.5e-06 54.3 109 30.3
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 9.5e-06 54.3 102 33.3


User provided reference genes

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