Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 4.4e-56 221.1 113 100.0
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 2.2e-47 192.2 116 89.7
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 3.1e-38 161.8 87 96.6
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 4.4e-16 88.2 122 45.9
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.3e-15 86.7 114 44.7
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.3e-15 86.7 120 43.3
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 2.9e-15 85.5 118 44.1
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.9e-15 84.7 129 45.7
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.1e-14 83.6 107 52.3
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.1e-14 83.6 118 44.9
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 1.4e-14 83.2 113 45.1
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 1.4e-14 83.2 117 42.7
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.9e-14 82.8 125 44.0
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.4e-14 82.4 119 47.1
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 3.2e-14 82.0 118 45.8
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 5.4e-14 81.3 119 50.4
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 5.4e-14 81.3 116 39.7
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 7.0e-14 80.9 125 44.0
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 7.0e-14 80.9 119 44.5
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.2e-13 80.1 118 44.1
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.6e-13 79.7 109 47.7
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 1.6e-13 79.7 125 44.8
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 1.6e-13 79.7 119 42.0
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 2.0e-13 79.3 124 44.4
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 2.0e-13 79.3 116 42.2
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 2.0e-13 79.3 122 41.0
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.7e-13 79.0 127 41.7
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.7e-13 79.0 122 44.3
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 3.5e-13 78.6 129 40.3
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.6e-13 78.2 108 41.7
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 4.6e-13 78.2 127 40.9
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 6.0e-13 77.8 114 42.1
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 7.8e-13 77.4 112 45.5
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.0e-12 77.0 119 47.9
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 1.0e-12 77.0 135 42.2
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.3e-12 76.6 113 42.5
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 1.7e-12 76.3 117 49.6
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.7e-12 76.3 125 38.4
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.7e-12 76.3 108 41.7
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.0e-12 75.5 110 43.6
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 3.9e-12 75.1 115 40.0
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 3.9e-12 75.1 115 40.9
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 3.9e-12 75.1 117 38.5
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 3.9e-12 75.1 113 38.9
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 5.0e-12 74.7 120 40.0
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 5.0e-12 74.7 111 40.5
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.6e-12 74.3 120 45.0
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 8.6e-12 73.9 112 42.0
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 8.6e-12 73.9 112 42.0
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.1e-11 73.6 125 41.6
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 1.1e-11 73.6 119 42.0
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 1.5e-11 73.2 113 42.5
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 1.9e-11 72.8 118 40.7
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.5e-11 72.4 113 45.1
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 3.3e-11 72.0 122 40.2
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 3.3e-11 72.0 110 35.5
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 4.3e-11 71.6 123 39.8
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 7.3e-11 70.9 111 41.4
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 9.5e-11 70.5 114 43.0
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 9.5e-11 70.5 114 43.0
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.5e-11 70.5 108 41.7
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 9.5e-11 70.5 108 41.7
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.2e-10 70.1 116 41.4
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 1.6e-10 69.7 114 38.6
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.1e-10 69.3 117 41.0
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.1e-10 69.3 124 40.3
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.8e-10 68.9 113 38.9
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 2.8e-10 68.9 107 43.0
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.6e-10 68.6 112 39.3
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.6e-10 68.6 114 43.9
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.6e-10 68.6 113 41.6
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 6.2e-10 67.8 121 38.8
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.1e-10 67.4 67 58.2
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 8.1e-10 67.4 116 37.1
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-09 66.6 70 62.9
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 1.4e-09 66.6 114 35.1
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 1.8e-09 66.2 83 50.6
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 1.8e-09 66.2 122 36.1
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 2.3e-09 65.9 117 40.2
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 2.3e-09 65.9 111 38.7
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.1e-09 65.5 80 43.8
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 3.1e-09 65.5 111 36.9
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 3.1e-09 65.5 120 39.2
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 4.0e-09 65.1 122 34.4
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 4.0e-09 65.1 117 38.5
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 5.2e-09 64.7 121 37.2
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 5.2e-09 64.7 110 40.0
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 5.2e-09 64.7 113 35.4
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 6.8e-09 64.3 64 60.9
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 6.8e-09 64.3 120 41.7
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 6.8e-09 64.3 116 39.7
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 8.9e-09 63.9 119 37.0
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.2e-08 63.5 112 39.3
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 1.5e-08 63.2 125 33.6
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 1.5e-08 63.2 116 36.2
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 1.5e-08 63.2 113 45.1
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 1.5e-08 63.2 72 50.0
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 1.5e-08 63.2 75 42.7
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.5e-08 63.2 76 43.4
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 2.0e-08 62.8 114 40.4
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.0e-08 62.8 114 41.2
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 2.6e-08 62.4 123 34.1
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 2.6e-08 62.4 95 37.9
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 2.6e-08 62.4 127 37.0
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 3.4e-08 62.0 69 49.3
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 4.4e-08 61.6 122 35.2
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 4.4e-08 61.6 115 40.9
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 5.8e-08 61.2 107 37.4
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 5.8e-08 61.2 116 39.7
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 7.5e-08 60.8 125 35.2
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 7.5e-08 60.8 125 35.2
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 7.5e-08 60.8 116 35.3
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 9.9e-08 60.5 111 37.8
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 1.3e-07 60.1 59 54.2
CANSAT64G1761 Cannabis sativa HOM05D005816 ORTHO05D006915 2.2e-07 59.3 172 33.7
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 2.2e-07 59.3 76 47.4
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.9e-07 58.9 117 34.2
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 4.9e-07 58.2 77 40.3
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 4.9e-07 58.2 125 36.8
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 4.9e-07 58.2 112 39.3
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 6.4e-07 57.8 81 38.3
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.1e-06 57.0 121 35.5
BraA08t32447Z Brassica rapa HOM05D012335 ORTHO05D014421 1.1e-06 57.0 64 45.3
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-06 57.0 102 39.2
A08p04230 Brassica napus HOM05D012335 ORTHO05D014421 1.4e-06 56.6 64 45.3
Carub.0001s3819 Capsella rubella HOM05D012335 ORTHO05D014421 1.4e-06 56.6 67 43.3
BolC8t47255H Brassica oleracea HOM05D012335 ORTHO05D014421 1.9e-06 56.2 64 45.3
C08p04500 Brassica napus HOM05D012335 ORTHO05D014421 2.4e-06 55.8 64 45.3
BcaB04g17372 Brassica carinata HOM05D012335 ORTHO05D014421 4.1e-06 55.1 64 45.3
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 4.1e-06 55.1 109 38.5
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 5.4e-06 54.7 73 41.1
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 7.1e-06 54.3 114 37.7
PSO017G0024 Papaver somniferum HOM05D005816 ORTHO05D006915 9.2e-06 53.9 24 95.8


User provided reference genes

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