Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g009910.3 Solanum lycopersicum HOM05D005369 ORTHO05D006955 1.5e-167 592.8 301 100.0
Sopen05g005710 Solanum pennellii HOM05D005369 ORTHO05D006955 1.5e-167 592.8 301 100.0
PGSC0003DMG400000806 Solanum tuberosum HOM05D005369 ORTHO05D006955 2.6e-164 582.0 299 98.0
CAN.G184.84 Capsicum annuum HOM05D005369 ORTHO05D006955 2.8e-158 562.0 297 95.6
Nitab4.5_0011812g0010 Nicotiana tabacum HOM05D005369 ORTHO05D006955 3.0e-152 542.0 305 91.5
Peaxi162Scf00367g00088 Petunia axillaris HOM05D005369 ORTHO05D006955 1.3e-142 510.0 299 87.6
Nitab4.5_0005803g0060 Nicotiana tabacum HOM05D005369 ORTHO05D006955 1.2e-137 493.4 276 90.9
Cc11_g10670 Coffea canephora HOM05D005369 ORTHO05D006955 3.5e-137 491.9 293 82.9
QL01p001045 Quercus lobata HOM05D005369 ORTHO05D006955 3.9e-136 488.4 304 80.9
Potri.010G130300 Populus trichocarpa HOM05D005369 ORTHO05D006955 1.6e-134 483.0 304 79.6
Actinidia14846 Actinidia chinensis HOM05D005369 ORTHO05D006955 4.8e-134 481.5 304 78.9
CSS0041757 Camellia sinensis var. sinensis HOM05D005369 ORTHO05D006955 4.8e-134 481.5 304 80.3
Potri.008G115700 Populus trichocarpa HOM05D005369 ORTHO05D006955 4.8e-134 481.5 304 79.3
Cfa018636 Carpinus fangiana HOM05D005369 ORTHO05D006955 2.4e-133 479.2 303 79.2
CiPaw.15G002800 Carya illinoinensis HOM05D005369 ORTHO05D006955 6.9e-133 477.6 304 79.9
SalBow8G4109 Salvia bowleyana HOM05D005369 ORTHO05D006955 9.0e-133 477.2 301 78.7
Lj3A1020T60 Lonicera japonica HOM05D005369 ORTHO05D006955 1.2e-132 476.9 299 78.6
Rhsim09G0113000 Rhododendron simsii HOM05D005369 ORTHO05D006955 2.0e-132 476.1 315 77.5
Cpa.g.sc53.119 Carica papaya HOM05D005369 ORTHO05D006955 2.6e-132 475.7 301 79.4
Sabra08G0087600 Salix brachista HOM05D005369 ORTHO05D006955 4.5e-132 474.9 304 78.0
COL.COLO4_07861 Corchorus olitorius HOM05D005369 ORTHO05D006955 5.8e-132 474.6 298 80.5
Psat6g179520 Pisum sativum HOM05D005369 ORTHO05D006955 5.8e-132 474.6 304 78.3
Thecc.02G362000 Theobroma cacao HOM05D005369 ORTHO05D006955 5.8e-132 474.6 299 79.6
TWI31G0309 Tripterygium wilfordii HOM05D005369 ORTHO05D006955 7.6e-132 474.2 299 78.9
Lj2g0009483 Lotus japonicus HOM05D005369 ORTHO05D006955 1.7e-131 473.0 302 78.1
Duzib251G0390 Durio zibethinus HOM05D005369 ORTHO05D006955 2.9e-131 472.2 295 80.7
Gohir.D12G174200 Gossypium hirsutum HOM05D005369 ORTHO05D006955 6.4e-131 471.1 298 80.5
Gorai.008G186900 Gossypium raimondii HOM05D005369 ORTHO05D006955 6.4e-131 471.1 298 80.5
Manes.14G096800 Manihot esculenta HOM05D005369 ORTHO05D006955 8.4e-131 470.7 295 78.3
Gohir.A12G171800 Gossypium hirsutum HOM05D005369 ORTHO05D006955 1.1e-130 470.3 298 80.5
Ca_10520_v3 Cicer arietinum L. HOM05D005369 ORTHO05D006955 1.4e-130 469.9 304 77.3
DCAR_030087 Daucus carota HOM05D005369 ORTHO05D006955 1.4e-130 469.9 298 77.9
TAR622G0781 Trochodendron aralioides HOM05D005369 ORTHO05D006955 1.4e-130 469.9 294 80.6
HanXRQChr02g0043381 Helianthus annuus HOM05D005369 ORTHO05D006955 2.4e-130 469.2 301 77.7
arahy.Tifrunner.gnm1.ann1.1BLX98 Arachis hypogaea HOM05D005369 ORTHO05D006955 4.2e-130 468.4 305 77.7
arahy.Tifrunner.gnm1.ann1.DD8P8M Arachis hypogaea HOM05D005369 ORTHO05D006955 4.2e-130 468.4 305 77.7
CANSAT64G0649 Cannabis sativa HOM05D005369 ORTHO05D006955 4.2e-130 468.4 305 74.8
Phvul.001G005600 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 4.2e-130 468.4 301 78.1
VMungo1215G0010 Vigna mungo HOM05D005369 ORTHO05D006955 4.2e-130 468.4 303 77.9
Ciclev10032187m.g Citrus clementina HOM05D005369 ORTHO05D006955 5.5e-130 468.0 301 76.4
Lalb_Chr02g0151791 Lupinus albus HOM05D005369 ORTHO05D006955 5.5e-130 468.0 305 76.7
TPR.G18699 Trifolium pratense HOM05D005369 ORTHO05D006955 7.1e-130 467.6 303 76.9
MSTRG.7694 Avicennia marina HOM05D005369 ORTHO05D006955 9.3e-130 467.2 306 76.5
DCAR_007223 Daucus carota HOM05D005369 ORTHO05D006955 1.2e-129 466.8 300 77.0
FAN07G1070 Fragaria x ananassa HOM05D005369 ORTHO05D006955 1.2e-129 466.8 299 78.3
Nn4g23711 Nelumbo nucifera HOM05D005369 ORTHO05D006955 1.2e-129 466.8 295 79.7
RcHm_v2.0_Chr4g0435941 Rosa chinensis HOM05D005369 ORTHO05D006955 1.2e-129 466.8 299 78.3
PGR119G0805 Punica granatum HOM05D005369 ORTHO05D006955 1.6e-129 466.5 306 76.5
Duzib248G0106 Durio zibethinus HOM05D005369 ORTHO05D006955 2.7e-129 465.7 295 79.3
FAN22G1382 Fragaria x ananassa HOM05D005369 ORTHO05D006955 2.7e-129 465.7 299 77.6
Hma1.2p1_0862F.1_g229880 Hydrangea macrophylla HOM05D005369 ORTHO05D006955 3.5e-129 465.3 322 73.9
Atru.chr11.1367 Acer truncatum HOM05D005369 ORTHO05D006955 4.6e-129 464.9 304 75.7
Haze_17433 Corylus avellana HOM05D005369 ORTHO05D006955 4.6e-129 464.9 304 77.3
FvH4_4g28180 Fragaria vesca HOM05D005369 ORTHO05D006955 6.0e-129 464.5 299 77.6
FAN12G2281 Fragaria x ananassa HOM05D005369 ORTHO05D006955 6.0e-129 464.5 299 77.6
Prupe.1G304600 Prunus persica HOM05D005369 ORTHO05D006955 7.9e-129 464.2 300 78.0
GSVIVG01011963001 Vitis vinifera HOM05D000398 ORTHO05D000551 7.9e-129 464.2 304 77.0
TAR374G0397 Trochodendron aralioides HOM05D005369 ORTHO05D006955 1.0e-128 463.8 298 78.9
CDE08G0426 Ceratophyllum demersum HOM05D005369 ORTHO05D006955 1.3e-128 463.4 303 75.9
CDE09G0148 Ceratophyllum demersum HOM05D005369 ORTHO05D009095 1.8e-128 463.0 304 75.7
MD13G1047300 Malus domestica HOM05D005369 ORTHO05D006955 1.8e-128 463.0 300 77.0
THA.LOC104800064 Tarenaya hassleriana HOM05D005369 ORTHO05D006955 1.8e-128 463.0 303 75.6
ECA246G2775 Erigeron canadensis HOM05D005369 ORTHO05D006955 2.3e-128 462.6 293 77.8
Phvul.003G026300 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 2.3e-128 462.6 302 77.5
Medtr1g093770 Medicago truncatula HOM05D005369 ORTHO05D006955 5.1e-128 461.5 304 75.3
TAR374G1244 Trochodendron aralioides HOM05D005369 ORTHO05D006955 5.1e-128 461.5 298 78.5
Lalb_Chr21g0313361 Lupinus albus HOM05D005369 ORTHO05D006955 6.7e-128 461.1 305 73.8
Zm00001eb431600 Zea mays HOM05D005369 ORTHO05D006955 6.7e-128 461.1 303 76.6
Eucgr.G02355 Eucalyptus grandis HOM05D005369 ORTHO05D006955 1.9e-127 459.5 303 74.9
MD16G1049100 Malus domestica HOM05D005369 ORTHO05D006955 1.9e-127 459.5 303 76.2
Glyma.02G100900 Glycine max HOM05D005369 ORTHO05D006955 2.5e-127 459.1 301 76.7
HPP92_005307 Vanilla planifolia HOM05D005369 ORTHO05D006955 2.5e-127 459.1 302 75.8
FAN17G2107 Fragaria x ananassa HOM05D005369 ORTHO05D006955 3.3e-127 458.8 299 76.6
Sed0002723 Sechium edule HOM05D005369 ORTHO05D006955 3.3e-127 458.8 300 75.0
Glyma.01G089100 Glycine max HOM05D005369 ORTHO05D006955 5.6e-127 458.0 304 76.6
MELO3C012211.2 Cucumis melo HOM05D005369 ORTHO05D006955 2.1e-126 456.1 300 76.0
EL10Ac6g14509 Beta vulgaris HOM05D005369 ORTHO05D006955 2.8e-126 455.7 301 76.1
CsaV3_5G033930 Cucumis sativus L. HOM05D005369 ORTHO05D006955 1.4e-125 453.4 303 74.9
AUR62035293 Chenopodium quinoa HOM05D005369 ORTHO05D006955 3.1e-125 452.2 306 74.5
Os02g0324300 Oryza sativa ssp. japonica HOM05D005369 ORTHO05D006955 3.1e-125 452.2 303 75.6
SGA_v2.0_scaffold16G07883 Striga asiatica HOM05D005369 ORTHO05D006955 6.9e-125 451.1 296 76.4
unitig_744.g24076 Utricularia gibba HOM05D005369 ORTHO05D006955 1.2e-124 450.3 303 75.2
PSO782G4917 Papaver somniferum HOM05D005369 ORTHO05D006955 3.8e-123 445.3 291 75.3
Carub.0001s2489 Capsella rubella HOM05D005369 ORTHO05D006955 4.9e-123 444.9 304 73.0
Lsat_1_v5_gn_3_58161 Lactuca sativa HOM05D005369 ORTHO05D006955 1.1e-122 443.7 288 76.4
PSO063G4132 Papaver somniferum HOM05D005369 ORTHO05D006955 1.1e-122 443.7 291 74.9
AUR62002925 Chenopodium quinoa HOM05D005369 ORTHO05D006955 1.9e-122 443.0 306 73.9
vmacro11462 Vaccinium macrocarpon HOM05D005369 ORTHO05D006955 2.5e-122 442.6 303 73.9
AL1G39700 Arabidopsis lyrata HOM05D005369 ORTHO05D006955 1.2e-121 440.3 304 72.4
Thhalv10008252m.g Eutrema salsugineum HOM05D005369 ORTHO05D006955 1.2e-121 440.3 302 72.8
Sp1g22610 Schrenkiella parvula HOM05D005369 ORTHO05D006955 4.6e-121 438.3 304 72.0
A08p27110 Brassica napus HOM05D005369 ORTHO05D006955 6.0e-121 438.0 303 72.6
BraA08t34656Z Brassica rapa HOM05D005369 ORTHO05D006955 6.0e-121 438.0 303 72.6
A09p39670 Brassica napus HOM05D005369 ORTHO05D006955 7.9e-121 437.6 296 73.6
AT1G25682 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 1.8e-120 436.4 301 72.4
BcaC05g26649 Brassica carinata HOM05D005369 ORTHO05D006955 1.8e-120 436.4 305 71.8
CARHR025850 Cardamine hirsuta HOM05D005369 ORTHO05D006955 2.3e-120 436.0 305 71.1
BolC5t31214H Brassica oleracea HOM05D005369 ORTHO05D006955 3.9e-120 435.3 295 73.9
BraA09t39463Z Brassica rapa HOM05D005369 ORTHO05D006955 5.1e-120 434.9 295 73.6
C03p72750 Brassica napus HOM05D005369 ORTHO05D006955 1.5e-119 433.3 303 72.3
BolC3t19573H Brassica oleracea HOM05D005369 ORTHO05D006955 1.5e-119 433.3 303 72.3
C05p24850 Brassica napus HOM05D005369 ORTHO05D006955 1.9e-119 433.0 303 71.6
FAN28G2319 Fragaria x ananassa HOM05D005369 ORTHO05D006955 1.9e-119 433.0 300 73.0
BcaNung06366 Brassica carinata HOM05D005369 ORTHO05D006955 2.5e-119 432.6 298 73.5
ATR0681G333 Amborella trichopoda HOM05D005369 ORTHO05D006955 3.3e-119 432.2 302 70.9
Ah.03g137930 Amaranthus hybridus HOM05D005369 ORTHO05D006955 4.3e-119 431.8 295 74.2
TAR622G1222 Trochodendron aralioides HOM05D005369 ORTHO05D006955 1.6e-118 429.9 273 80.2
SEGI_22738 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 4.8e-118 428.3 296 72.6
Aqoxy5G00581 Aquilegia oxysepala HOM05D005369 ORTHO05D006955 3.1e-117 425.6 297 71.4
Migut.L01099 Erythranthe guttata HOM05D005369 ORTHO05D006955 9.0e-117 424.1 302 71.9
Actinidia16612 Actinidia chinensis HOM05D005369 ORTHO05D006955 7.6e-116 421.0 314 70.4
Aa31LG7G8920 Aethionema arabicum HOM05D005369 ORTHO05D006955 1.1e-114 417.2 304 69.4
BcaB03g12082 Brassica carinata HOM05D005369 ORTHO05D006955 9.3e-114 414.1 303 70.3
FAN26G1965 Fragaria x ananassa HOM05D005369 ORTHO05D006955 9.3e-114 414.1 281 73.0
Mapoly0084s0019 Marchantia polymorpha HOM05D005369 ORTHO05D006955 4.1e-109 398.7 303 67.3
Hund05770 Selenicereus undatus HOM05D005369 ORTHO05D006955 5.0e-107 391.7 229 83.0
AagrBONN_evm.TU.Sc2ySwM_362.2009 Anthoceros agrestis HOM05D005369 ORTHO05D006955 6.5e-107 391.3 307 64.8
SMO353G0425 Selaginella moellendorffii HOM05D005369 ORTHO05D006955 1.0e-104 384.0 295 66.4
Pp3c18_5500 Physcomitrium patens HOM05D005369 ORTHO05D006955 5.7e-103 378.3 301 65.1
Dinv05803 Davidia involucrata HOM05D005369 ORTHO05D006955 2.2e-102 376.3 210 86.7
FAN19G0967 Fragaria x ananassa HOM05D002945 ORTHO05D003314 9.7e-87 324.3 279 61.3
ClCG05G023060 Citrullus lanatus HOM05D005369 ORTHO05D006955 3.7e-86 322.4 302 58.3
CBR_g16048 Chara braunii HOM05D005369 ORTHO05D006955 1.4e-85 320.5 327 53.8
FAN23G0001 Fragaria x ananassa HOM05D002945 ORTHO05D003314 9.1e-85 317.8 193 75.6
Sc11g0003050 Simmondsia chinensis HOM05D005369 ORTHO05D006955 2.9e-75 286.2 219 68.9
Sabra10G0099400 Salix brachista HOM05D005369 ORTHO05D006955 4.7e-73 278.9 240 63.8
Dinv16512 Davidia involucrata HOM05D005369 ORTHO05D006955 6.8e-72 275.0 138 92.0
FvH4_1g20000 Fragaria vesca HOM05D005369 ORTHO05D006955 8.3e-70 268.1 247 57.9
Cre02.g082050 Chlamydomonas reinhardtii HOM05D005369 ORTHO05D006955 3.6e-57 226.1 261 50.2
HanXRQChr17g0551311 Helianthus annuus HOM05D005369 ORTHO05D006955 1.1e-48 198.0 125 79.2
Haze_27439 Corylus avellana HOM05D005369 ORTHO05D002042 6.6e-43 178.7 278 37.1
MCO09G730 Micromonas commoda HOM05D005369 ORTHO05D006955 1.4e-40 171.0 251 39.0
CAN.G216.8 Capsicum annuum HOM05D005369 ORTHO05D006955 2.1e-33 147.1 104 78.8
SEGI_28822 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 1.7e-30 137.5 224 39.7
HanXRQChr14g0430991 Helianthus annuus HOM05D005369 ORTHO05D006955 7.1e-29 132.1 135 57.8
AT1G25988 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 3.1e-24 116.7 78 71.8
Cfa025377 Carpinus fangiana HOM05D005369 ORTHO05D006955 7.6e-15 85.5 201 32.3
EL10Ac6g14510 Beta vulgaris HOM05D005369 ORTHO05D039022 2.2e-14 84.0 40 90.0
Lsat_1_v5_gn_6_27721 Lactuca sativa HOM05D005369 ORTHO05D006955 2.2e-14 84.0 70 58.6
Migut.H00158 Erythranthe guttata HOM05D002017 ORTHO05D002042 1.9e-13 80.9 213 31.5
Medtr3g101280 Medicago truncatula HOM05D005369 ORTHO05D039022 1.9e-13 80.9 54 66.7
SalBow1G2449 Salvia bowleyana HOM05D001761 ORTHO05D001719 2.5e-13 80.5 50 78.0
Gohir.D02G007900 Gossypium hirsutum HOM05D002017 ORTHO05D002042 1.6e-12 77.8 203 28.6
Gorai.005G009400 Gossypium raimondii HOM05D002017 ORTHO05D002042 1.6e-12 77.8 203 28.6
Zm00001eb014670 Zea mays HOM05D005369 ORTHO05D006955 1.5e-10 71.2 44 75.0
Actinidia04590 Actinidia chinensis HOM05D002017 ORTHO05D002042 2.5e-10 70.5 201 27.9
HanXRQChr03g0063441 Helianthus annuus HOM05D005369 ORTHO05D006955 4.3e-10 69.7 55 67.3
AT2G32050 Arabidopsis thaliana HOM05D002017 ORTHO05D002042 6.2e-09 65.9 208 26.4
Atru.chr3.3953 Acer truncatum HOM05D002017 ORTHO05D002042 8.2e-09 65.5 149 30.2
BolC9t57869H Brassica oleracea HOM05D002017 ORTHO05D002042 1.8e-08 64.3 212 26.9
Aqoxy1G01832 Aquilegia oxysepala HOM05D002017 ORTHO05D002042 4.0e-08 63.2 115 31.3
Atru.chr2.3694 Acer truncatum HOM05D002017 ORTHO05D002042 1.2e-07 61.6 112 32.1
AL4G27430 Arabidopsis lyrata HOM05D002017 ORTHO05D002042 3.4e-07 60.1 214 26.6
Dinv25524 Davidia involucrata HOM05D002017 ORTHO05D002042 3.4e-07 60.1 122 29.5
Aqoxy1G01806 Aquilegia oxysepala HOM05D002017 ORTHO05D002042 1.7e-06 57.8 198 24.7
Aqoxy1G01830 Aquilegia oxysepala HOM05D002017 ORTHO05D002042 1.7e-06 57.8 198 24.7
A04p18860 Brassica napus HOM05D002017 ORTHO05D002042 2.9e-06 57.0 114 28.9
Dinv25553 Davidia involucrata HOM05D002017 ORTHO05D002042 2.9e-06 57.0 122 28.7
BcaC02g08934 Brassica carinata HOM05D002017 ORTHO05D002042 3.8e-06 56.6 107 31.8
C04p48730 Brassica napus HOM05D002017 ORTHO05D002042 8.4e-06 55.5 70 34.3


User provided reference genes

Program Settings