Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g009860.3 Solanum lycopersicum HOM05D000342 ORTHO05D390711 5.8e-43 177.2 90 100.0
PGSC0003DMG400000825 Solanum tuberosum HOM05D000342 ORTHO05D000217 1.2e-27 126.3 68 91.2
Nitab4.5_0011513g0030 Nicotiana tabacum HOM05D000342 ORTHO05D000217 2.0e-19 99.0 68 76.5
Nitab4.5_0004122g0080 Nicotiana tabacum HOM05D000342 ORTHO05D000217 3.4e-19 98.2 68 76.5
Peaxi162Scf00380g00216 Petunia axillaris HOM05D000342 ORTHO05D000217 5.4e-17 90.9 68 73.5
Ciclev10033821m.g Citrus clementina HOM05D000342 ORTHO05D000217 1.3e-10 69.7 64 51.6
QL01p046195 Quercus lobata HOM05D000342 ORTHO05D000217 1.7e-10 69.3 54 68.5
Atru.chr11.1351 Acer truncatum HOM05D000342 ORTHO05D000217 3.8e-10 68.2 55 60.0
Gohir.A12G170600 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.1e-09 66.6 53 58.5
Lj6C766G3 Lonicera japonica HOM05D000342 ORTHO05D000217 1.1e-09 66.6 64 56.2
vmacro10528 Vaccinium macrocarpon HOM05D000342 ORTHO05D000217 1.1e-09 66.6 71 52.1
CiPaw.16G003000 Carya illinoinensis HOM05D000342 ORTHO05D000217 1.4e-09 66.2 67 53.7
Prupe.1G305100 Prunus persica HOM05D000342 ORTHO05D000217 1.4e-09 66.2 58 58.6
Duzib251G0057 Durio zibethinus HOM05D000342 ORTHO05D000217 1.9e-09 65.9 53 62.3
Gohir.D12G173800 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.9e-09 65.9 53 58.5
Rhsim09G0112700 Rhododendron simsii HOM05D000342 ORTHO05D000217 1.9e-09 65.9 63 52.4
RcHm_v2.0_Chr4g0435881 Rosa chinensis HOM05D000342 ORTHO05D000217 1.9e-09 65.9 60 55.0
MD16G1048500 Malus domestica HOM05D000342 ORTHO05D000217 4.2e-09 64.7 62 54.8
Rhsim12G0081500 Rhododendron simsii HOM05D000342 ORTHO05D000217 4.2e-09 64.7 68 51.5
Oeu031719.1 Olea europaea HOM05D000342 ORTHO05D000217 5.4e-09 64.3 59 61.0
Thecc.02G361400 Theobroma cacao HOM05D000342 ORTHO05D000217 7.1e-09 63.9 62 56.5
Ah.11g047100 Amaranthus hybridus HOM05D000342 ORTHO05D000217 9.3e-09 63.5 67 49.3
CSS0013831 Camellia sinensis var. sinensis HOM05D000342 ORTHO05D000217 9.3e-09 63.5 66 51.5
FAN07G2100 Fragaria x ananassa HOM05D000342 ORTHO05D000217 9.3e-09 63.5 61 54.1
FAN17G0518 Fragaria x ananassa HOM05D000342 ORTHO05D000217 9.3e-09 63.5 61 54.1
MD13G1046900 Malus domestica HOM05D000342 ORTHO05D000217 9.3e-09 63.5 59 55.9
AUR62036957 Chenopodium quinoa HOM05D000342 ORTHO05D000217 1.2e-08 63.2 63 52.4
QL10p022656 Quercus lobata HOM05D000342 ORTHO05D000217 1.2e-08 63.2 61 49.2
QL10p022679 Quercus lobata HOM05D000342 ORTHO05D000217 1.2e-08 63.2 61 49.2
vmacro01364 Vaccinium macrocarpon HOM05D000342 ORTHO05D000217 1.6e-08 62.8 68 51.5
GSVIVG01011958001 Vitis vinifera HOM05D000342 ORTHO05D000217 1.6e-08 62.8 53 62.3
Actinidia38396 Actinidia chinensis HOM05D000342 ORTHO05D000217 2.1e-08 62.4 53 60.4
AUR62032192 Chenopodium quinoa HOM05D000342 ORTHO05D000217 2.1e-08 62.4 54 57.4
Sc04g0006740 Simmondsia chinensis HOM05D000342 ORTHO05D000217 2.1e-08 62.4 55 54.5
COL.COLO4_07866 Corchorus olitorius HOM05D000342 ORTHO05D000217 2.7e-08 62.0 53 60.4
FvH4_4g28110 Fragaria vesca HOM05D000342 ORTHO05D000217 2.7e-08 62.0 61 52.5
FAN12G0381 Fragaria x ananassa HOM05D000342 ORTHO05D000217 2.7e-08 62.0 61 52.5
Potri.008G116500 Populus trichocarpa HOM05D000342 ORTHO05D000217 2.7e-08 62.0 52 55.8
Actinidia13677 Actinidia chinensis HOM05D000342 ORTHO05D000217 3.5e-08 61.6 64 50.0
FAN22G1449 Fragaria x ananassa HOM05D000342 ORTHO05D000217 3.5e-08 61.6 60 53.3
Potri.010G129800 Populus trichocarpa HOM05D000342 ORTHO05D000217 3.5e-08 61.6 64 46.9
Sabra08G0088200 Salix brachista HOM05D000342 ORTHO05D000217 3.5e-08 61.6 64 46.9
TWI79G0874 Tripterygium wilfordii HOM05D000342 ORTHO05D000217 3.5e-08 61.6 58 58.6
Ca_10517_v3 Cicer arietinum L. HOM05D000342 ORTHO05D000217 4.6e-08 61.2 68 47.1
Cc11_g10630 Coffea canephora HOM05D000342 ORTHO05D000217 4.6e-08 61.2 63 54.0
Hma1.2p1_1182F.1_g264750 Hydrangea macrophylla HOM05D000342 ORTHO05D000217 4.6e-08 61.2 53 58.5
Lj2g0002315 Lotus japonicus HOM05D000342 ORTHO05D000217 4.6e-08 61.2 54 57.4
Cfa018631 Carpinus fangiana HOM05D000342 ORTHO05D000217 7.8e-08 60.5 54 59.3
Haze_17438 Corylus avellana HOM05D000342 ORTHO05D000217 7.8e-08 60.5 65 50.8
Psat6g178400 Pisum sativum HOM05D000342 ORTHO05D000217 1.0e-07 60.1 52 51.9
TPR.G18698 Trifolium pratense HOM05D000342 ORTHO05D000217 1.0e-07 60.1 53 54.7
TAR622G0874 Trochodendron aralioides HOM05D000342 ORTHO05D000217 1.3e-07 59.7 67 50.7
Atru.chr9.758 Acer truncatum HOM05D000342 ORTHO05D000217 2.3e-07 58.9 53 54.7
arahy.Tifrunner.gnm1.ann1.M05HM0 Arachis hypogaea HOM05D000342 ORTHO05D000217 2.3e-07 58.9 52 53.8
Gohir.D12G265700 Gossypium hirsutum HOM05D000342 ORTHO05D000217 2.3e-07 58.9 53 56.6
Gorai.008G285400 Gossypium raimondii HOM05D000342 ORTHO05D000217 2.3e-07 58.9 53 56.6
PGR119G1017 Punica granatum HOM05D000342 ORTHO05D000217 2.3e-07 58.9 61 55.7
Duzib205G0417 Durio zibethinus HOM05D000342 ORTHO05D000217 3.0e-07 58.5 53 54.7
Hund30763 Selenicereus undatus HOM05D000342 ORTHO05D000217 3.0e-07 58.5 54 55.6
CSS0009063 Camellia sinensis var. sinensis HOM05D000342 ORTHO05D000217 3.9e-07 58.2 54 59.3
CSS0028235 Camellia sinensis var. sinensis HOM05D000342 ORTHO05D000217 3.9e-07 58.2 54 59.3
GSVIVG01008238001 Vitis vinifera HOM05D000342 ORTHO05D000217 3.9e-07 58.2 57 49.1
Aqoxy3G00392 Aquilegia oxysepala HOM05D000342 ORTHO05D000217 5.1e-07 57.8 53 56.6
CiPaw.15G003400 Carya illinoinensis HOM05D000342 ORTHO05D000217 5.1e-07 57.8 61 54.1
Glyma.10G204800 Glycine max HOM05D000342 ORTHO05D000217 5.1e-07 57.8 53 54.7
Gohir.A12G265500 Gossypium hirsutum HOM05D000342 ORTHO05D000217 5.1e-07 57.8 63 50.8
Thecc.03G028300 Theobroma cacao HOM05D000342 ORTHO05D000217 6.6e-07 57.4 53 54.7
Manes.14G097300 Manihot esculenta HOM05D000342 ORTHO05D000217 8.7e-07 57.0 52 51.9
PSO478G2443 Papaver somniferum HOM05D000342 ORTHO05D000217 8.7e-07 57.0 53 56.6
arahy.Tifrunner.gnm1.ann1.T1J2UZ Arachis hypogaea HOM05D000342 ORTHO05D000217 1.1e-06 56.6 53 54.7
CANSAT64G2518 Cannabis sativa HOM05D000342 ORTHO05D000217 1.1e-06 56.6 70 45.7
Duzib084G0341 Durio zibethinus HOM05D000342 ORTHO05D000217 1.1e-06 56.6 61 47.5
EL10Ac5g11252 Beta vulgaris HOM05D000342 ORTHO05D000217 1.5e-06 56.2 58 50.0
CDE05G0446 Ceratophyllum demersum HOM05D000342 ORTHO05D000217 1.5e-06 56.2 52 53.8
Hund10001 Selenicereus undatus HOM05D000342 ORTHO05D000217 1.5e-06 56.2 63 49.2
Medtr1g093720 Medicago truncatula HOM05D000342 ORTHO05D000217 1.9e-06 55.8 53 50.9
TAR374G1729 Trochodendron aralioides HOM05D000342 ORTHO05D000217 2.5e-06 55.5 67 50.7
CiPaw.16G084100 Carya illinoinensis HOM05D000342 ORTHO05D000217 3.3e-06 55.1 53 49.1
Lalb_Chr17g0341871 Lupinus albus HOM05D000342 ORTHO05D000217 3.3e-06 55.1 53 50.9
MBI12_g20559_MAGBIO Magnolia biondii HOM05D000342 ORTHO05D000217 3.3e-06 55.1 55 47.3
COL.COLO4_22721 Corchorus olitorius HOM05D000342 ORTHO05D000217 4.3e-06 54.7 52 53.8
Eucgr.B03055 Eucalyptus grandis HOM05D000342 ORTHO05D000217 4.3e-06 54.7 53 56.6
Nn3g17713 Nelumbo nucifera HOM05D000342 ORTHO05D000217 4.3e-06 54.7 52 57.7
VMungo0720G0643 Vigna mungo HOM05D000342 ORTHO05D000217 4.3e-06 54.7 53 50.9
Actinidia18944 Actinidia chinensis HOM05D000342 ORTHO05D000217 5.6e-06 54.3 53 52.8
Dinv05799 Davidia involucrata HOM05D000342 ORTHO05D000217 5.6e-06 54.3 53 56.6
Phvul.007G102100 Phaseolus vulgaris HOM05D000342 ORTHO05D000217 5.6e-06 54.3 68 45.6
ATR0753G152 Amborella trichopoda HOM05D000342 ORTHO05D000217 7.3e-06 53.9 58 41.4
Lj5g0024934 Lotus japonicus HOM05D000342 ORTHO05D000217 7.3e-06 53.9 55 52.7
Rhsim06G0031000 Rhododendron simsii HOM05D000342 ORTHO05D000217 7.3e-06 53.9 61 41.0
SHI18918 Sapria himalayana HOM05D000342 ORTHO05D000217 7.3e-06 53.9 70 44.3
TWI31G1400 Tripterygium wilfordii HOM05D000342 ORTHO05D000217 7.3e-06 53.9 61 49.2
Actinidia35076 Actinidia chinensis HOM05D000342 ORTHO05D000217 9.6e-06 53.5 63 44.4
PSO017G6207 Papaver somniferum HOM05D000342 ORTHO05D000217 9.6e-06 53.5 54 55.6


User provided reference genes

Program Settings