Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 7.1e-165 583.9 314 100.0
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 3.5e-164 581.6 314 99.7
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.5e-141 505.8 292 95.2
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.0e-126 457.2 316 73.4
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 6.5e-126 454.5 315 74.0
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.7e-78 297.0 308 55.5
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.5e-77 293.9 287 61.0
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.7e-76 288.9 287 57.8
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 9.2e-72 274.6 337 53.7
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 4.3e-69 265.8 337 50.4
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.2e-68 264.2 325 53.2
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.6e-68 263.8 321 50.5
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.0e-66 256.9 304 52.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 2.9e-65 253.1 316 46.8
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 8.4e-65 251.5 319 51.4
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.6e-63 247.3 304 49.0
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 2.7e-63 246.5 317 46.7
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.5e-63 246.1 314 51.6
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.9e-62 242.7 312 51.0
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.7e-62 241.5 315 50.5
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.5e-61 240.0 315 50.2
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.5e-61 240.0 304 47.7
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 6.2e-60 235.3 319 44.5
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.8e-59 233.8 313 47.6
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.8e-58 228.8 314 42.7
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 2.4e-56 223.4 315 41.9
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 2.7e-55 219.9 327 45.9
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.0e-54 216.5 314 45.5
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.9e-54 216.1 309 43.4
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.6e-52 209.5 323 46.7
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.8e-52 209.1 328 47.0
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 6.2e-52 208.8 332 43.4
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.1e-51 208.0 318 43.4
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-51 208.0 328 46.6
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.8e-51 207.2 320 41.2
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.8e-51 207.2 328 46.6
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 2.4e-51 206.8 320 43.1
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.1e-51 206.5 320 40.0
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 4.0e-51 206.1 317 39.4
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 4.0e-51 206.1 316 47.8
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 6.9e-51 205.3 320 39.7
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 9.0e-51 204.9 229 47.6
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 1.2e-50 204.5 316 40.2
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.5e-50 204.1 332 45.2
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.3e-49 201.1 330 45.8
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.3e-49 201.1 336 41.1
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 6.4e-49 198.7 312 40.1
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-48 198.0 328 40.9
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 3.2e-48 196.4 329 45.3
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 4.2e-48 196.1 333 44.1
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 3.5e-47 193.0 324 44.1
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.0e-46 191.4 325 40.3
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.0e-46 191.4 314 44.6
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 5.1e-46 189.1 318 36.5
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.3e-44 184.5 324 35.8
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.6e-44 184.1 324 37.3
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 4.8e-44 182.6 324 35.5
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.8e-43 180.6 342 40.9
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 4.0e-43 179.5 316 41.5
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 9.0e-43 178.3 315 34.9
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.5e-42 177.6 312 34.6
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.0e-42 177.2 306 37.6
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.4e-42 176.4 320 34.7
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.4e-40 171.0 334 38.9
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.9e-40 170.6 324 34.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.2e-39 167.9 260 43.8
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.6e-39 167.5 299 42.1
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.7e-39 166.8 324 36.1
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 4.6e-39 166.0 309 43.0
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 7.9e-39 165.2 337 38.6
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 3.0e-38 163.3 319 39.5
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 3.0e-38 163.3 330 40.3
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.1e-37 161.4 335 40.9
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 1.9e-37 160.6 311 41.8
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 9.6e-37 158.3 330 35.5
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.3e-36 157.9 330 33.3
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-36 156.8 333 41.1
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 3.7e-36 156.4 315 35.2
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.1e-35 154.8 314 32.8
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.4e-35 154.5 314 33.1
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 2.4e-35 153.7 313 38.3
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 3.1e-35 153.3 331 36.0
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 3.1e-35 153.3 335 40.9
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 4.1e-35 152.9 312 35.3
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.3e-35 152.5 322 38.5
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 9.0e-35 151.8 307 35.2
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 1.5e-34 151.0 325 39.7
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 2.6e-34 150.2 330 33.9
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 7.6e-34 148.7 335 37.0
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-33 148.3 333 37.5
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.7e-33 147.5 333 37.8
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.7e-33 147.5 260 42.3
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 2.2e-33 147.1 335 37.0
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 5.0e-33 146.0 327 37.3
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 5.0e-33 146.0 323 39.0
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 6.5e-33 145.6 327 31.5
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.5e-33 145.2 274 37.2
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.9e-32 144.1 327 36.1
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 5.5e-32 142.5 315 36.8
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 7.2e-32 142.1 321 34.6
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 1.2e-31 141.4 305 33.8
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.6e-31 141.0 325 39.7
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 2.1e-31 140.6 299 32.1
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 4.6e-31 139.4 317 39.1
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 7.9e-31 138.7 322 38.2
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 7.9e-31 138.7 322 38.2
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-30 137.5 317 36.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.8e-30 137.5 317 36.9
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.3e-30 137.1 318 37.1
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.9e-30 136.3 321 39.9
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.9e-30 136.3 317 32.5
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 6.7e-30 135.6 333 37.2
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.5e-29 133.7 329 37.1
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 7.4e-29 132.1 327 35.5
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 7.4e-29 132.1 327 37.3
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 9.7e-29 131.7 313 32.3
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.6e-28 131.0 325 31.4
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.4e-27 127.9 304 37.8
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 5.3e-27 125.9 203 40.4
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 9.0e-27 125.2 332 37.0
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 7.7e-26 122.1 313 32.3
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.3e-25 121.3 300 40.0
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 4.2e-24 116.3 299 28.4
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 4.2e-24 116.3 301 35.5
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 7.2e-24 115.5 304 37.2
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 7.9e-23 112.1 303 35.0
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.0e-22 111.7 298 32.9
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.5e-21 107.8 309 31.4
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 6.3e-20 102.4 311 35.0
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-19 100.9 295 30.2
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 6.9e-19 99.0 191 35.1
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 9.1e-19 98.6 297 31.0
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 7.7e-18 95.5 297 33.3
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-17 95.1 308 32.1
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.0e-17 95.1 308 32.1
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.0e-17 95.1 308 32.1
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.0e-17 95.1 297 31.6
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.7e-17 94.4 153 36.6
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 2.9e-17 93.6 250 36.4
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.0e-17 92.8 253 37.2
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 6.5e-17 92.4 267 33.7
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.1e-16 91.7 176 29.5
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.9e-16 90.9 287 34.5
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 4.2e-16 89.7 266 38.3
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 5.5e-16 89.4 301 33.9
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 9.4e-16 88.6 313 35.1
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 2.7e-15 87.0 263 34.6
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.1e-15 85.9 229 36.7
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.0e-14 83.6 168 31.0
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 1.5e-13 81.3 198 32.3
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 5.7e-13 79.3 239 31.4
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.8e-12 77.0 181 32.6
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 4.1e-11 73.2 154 36.4
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 1.2e-07 61.6 301 29.2


User provided reference genes

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