Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 5.4e-163 577.8 333 100.0
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 5.3e-86 322.0 237 81.9
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 5.2e-81 305.4 197 92.4
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 2.1e-58 230.3 309 48.9
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.0e-56 223.8 267 51.3
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.0e-56 223.8 267 51.3
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.8e-56 222.2 267 50.9
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 3.7e-55 219.5 274 50.4
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.3e-55 218.4 295 50.5
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 3.2e-54 216.5 304 48.4
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.7e-52 210.7 259 49.4
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.7e-52 210.7 267 49.1
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 3.9e-52 209.5 279 49.8
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.9e-51 207.2 309 48.9
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 2.8e-50 203.4 259 51.4
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 6.2e-50 202.2 288 49.7
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 6.2e-50 202.2 273 48.7
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 8.1e-50 201.8 301 47.5
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.4e-49 201.1 288 48.3
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.8e-49 200.7 289 48.1
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.1e-49 199.9 273 48.0
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.0e-49 199.5 288 47.9
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 4.0e-49 199.5 305 48.2
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 2.0e-48 197.2 298 45.3
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 2.6e-48 196.8 306 45.1
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 2.6e-48 196.8 288 48.6
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.6e-48 196.8 249 51.4
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.4e-48 196.4 287 46.7
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 5.8e-48 195.7 273 49.1
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 7.6e-48 195.3 242 50.8
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 7.6e-48 195.3 306 47.7
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 7.6e-48 195.3 258 50.4
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.3e-47 194.5 288 47.9
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.7e-47 194.1 317 44.5
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 4.9e-47 192.6 291 48.1
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 8.3e-47 191.8 300 46.3
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.1e-46 189.5 306 44.1
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 4.1e-46 189.5 276 44.9
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 5.4e-46 189.1 249 48.6
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 5.4e-46 189.1 253 51.8
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 7.1e-46 188.7 267 47.2
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.1e-45 187.2 298 45.0
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.6e-45 186.0 308 43.5
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 7.8e-45 185.3 266 46.6
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 7.8e-45 185.3 248 48.0
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.7e-44 184.1 260 49.6
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.3e-44 183.7 266 48.5
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 3.9e-44 183.0 303 45.5
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 3.9e-44 183.0 320 45.3
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 6.6e-44 182.2 270 45.9
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.5e-43 181.0 289 45.3
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 9.6e-43 178.3 271 44.3
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 2.1e-42 177.2 319 40.1
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 2.1e-42 177.2 266 46.6
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 4.7e-42 176.0 244 45.9
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.8e-41 174.1 267 44.9
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 5.2e-41 172.6 211 51.7
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 2.6e-40 170.2 299 41.8
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 3.4e-40 169.9 278 43.5
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 5.8e-40 169.1 222 47.7
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 7.6e-40 168.7 257 48.6
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.3e-39 167.9 245 50.2
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.2e-39 167.2 246 46.7
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.9e-39 166.8 288 45.5
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 2.9e-39 166.8 331 44.1
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 6.4e-39 165.6 234 52.6
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.4e-39 165.6 181 57.5
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 5.4e-38 162.5 274 43.4
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.3e-38 161.8 299 39.8
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.3e-38 161.8 299 39.8
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.6e-37 159.5 305 38.7
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 2.3e-36 157.1 272 41.5
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.9e-36 156.4 292 44.5
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 8.7e-36 155.2 246 44.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.5e-35 154.5 277 41.9
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.3e-35 152.9 251 43.8
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 5.6e-35 152.5 289 44.3
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.8e-33 147.5 261 41.8
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 9.0e-33 145.2 224 45.1
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 9.0e-33 145.2 255 45.1
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.5e-32 144.4 244 44.7
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.0e-32 144.1 255 44.3
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 5.8e-32 142.5 244 41.0
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.7e-31 141.0 256 47.3
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 4.9e-31 139.4 224 44.2
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 8.4e-31 138.7 244 43.9
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-30 137.9 243 42.4
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 4.2e-30 136.3 257 43.2
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 7.1e-30 135.6 203 49.3
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 9.3e-30 135.2 243 40.3
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 4.6e-29 132.9 257 42.4
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.6e-29 132.9 294 39.1
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 4.6e-29 132.9 281 41.6
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 6.0e-29 132.5 253 41.1
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 1.0e-28 131.7 254 42.5
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 1.0e-28 131.7 254 42.5
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 3.0e-28 130.2 265 40.0
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 8.7e-28 128.6 255 41.2
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 2.5e-27 127.1 262 40.1
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 3.3e-27 126.7 96 69.8
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 5.6e-27 125.9 223 46.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 9.6e-27 125.2 96 69.8
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 2.1e-26 124.0 269 41.6
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 6.2e-26 122.5 253 39.9
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-25 121.3 203 43.3
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.8e-25 120.9 252 39.3
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.8e-25 120.9 88 70.5
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.4e-25 120.6 147 49.7
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 9.0e-25 118.6 304 37.8
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.2e-24 118.2 242 39.3
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.6e-24 117.1 242 38.4
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.8e-24 115.9 199 41.2
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.7e-23 114.4 294 36.1
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.2e-23 114.0 242 39.3
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 2.2e-23 114.0 293 36.2
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.8e-23 113.2 240 39.6
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.9e-23 112.8 139 50.4
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.1e-22 111.7 81 71.6
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.9e-22 110.9 141 49.6
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.4e-22 110.5 228 40.4
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.2e-22 110.2 93 62.4
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.2e-22 110.2 93 62.4
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 4.2e-22 109.8 75 73.3
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 9.3e-22 108.6 142 49.3
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 4.6e-21 106.3 98 61.2
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 6.0e-21 105.9 210 38.6
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 3.9e-20 103.2 244 38.5
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.1e-19 101.7 262 34.4
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 5.6e-19 99.4 210 37.6
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 5.6e-19 99.4 210 37.6
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 9.6e-19 98.6 257 34.2
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 4.8e-18 96.3 224 41.1
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 6.9e-17 92.4 264 36.0
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 9.0e-17 92.0 100 55.0
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 1.5e-16 91.3 182 42.3
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.7e-15 87.8 238 38.7
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 1.7e-15 87.8 243 33.3
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 6.5e-15 85.9 293 32.1
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 8.4e-15 85.5 201 37.3
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.4e-14 84.7 181 45.9
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.5e-14 84.0 253 34.8
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 7.9e-13 79.0 282 36.5
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 2.1e-10 70.9 59 57.6
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.8e-10 70.5 43 74.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.8e-10 70.5 43 74.4
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.8e-09 67.8 40 72.5
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.1e-09 66.6 70 51.4
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.3e-09 66.2 65 52.3
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.3e-09 66.2 57 54.4
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.2e-08 65.1 253 31.6
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.2e-08 65.1 40 70.0
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.2e-08 65.1 274 33.9
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 2.0e-08 64.3 245 36.3
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.4e-08 63.5 219 34.2
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 1.3e-07 61.6 132 39.4
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.9e-06 57.8 283 31.1
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 1.9e-06 57.8 145 34.5
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 4.2e-06 56.6 170 32.4
CDE04G0840 Ceratophyllum demersum HOM05D000793 ORTHO05D000783 5.5e-06 56.2 80 40.0
BcaC06g30748 Brassica carinata HOM05D000333 ORTHO05D000190 9.3e-06 55.5 88 42.0
BolC7t44468H Brassica oleracea HOM05D000333 ORTHO05D000190 9.3e-06 55.5 88 42.0
Duzib235G1042 Durio zibethinus HOM05D000333 ORTHO05D000190 9.3e-06 55.5 98 30.6
Lj3P1012T42 Lonicera japonica HOM05D001250 ORTHO05D000627 9.3e-06 55.5 90 37.8


User provided reference genes

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