Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g009300.1 Solanum lycopersicum HOM05D007264 ORTHO05D008639 4.1e-76 288.1 161 100.0
Sopen05g005050 Solanum pennellii HOM05D007264 ORTHO05D008639 8.1e-72 273.9 164 96.3
PGSC0003DMG400014567 Solanum tuberosum HOM05D007264 ORTHO05D008639 2.3e-66 255.8 164 90.2
Peaxi162Scf00038g02028 Petunia axillaris HOM05D007264 ORTHO05D008639 5.3e-39 164.9 169 62.1
Nitab4.5_0014843g0020 Nicotiana tabacum HOM05D007264 ORTHO05D008639 7.1e-36 154.5 176 61.9
Nitab4.5_0006942g0010 Nicotiana tabacum HOM05D007264 ORTHO05D008639 2.3e-34 149.4 176 63.1
Migut.D00885 Erythranthe guttata HOM05D007264 ORTHO05D008639 2.7e-27 125.9 167 53.3
Eucgr.J02035 Eucalyptus grandis HOM05D007264 ORTHO05D008639 3.6e-27 125.6 93 75.3
FAN25G3374 Fragaria x ananassa HOM05D007264 ORTHO05D008639 4.3e-25 118.6 172 47.1
RcHm_v2.0_Chr5g0066101 Rosa chinensis HOM05D007264 ORTHO05D008639 4.3e-25 118.6 172 48.3
FAN21G2492 Fragaria x ananassa HOM05D007264 ORTHO05D008639 7.4e-25 117.9 172 47.1
EL10Ac7g16055 Beta vulgaris HOM05D007264 ORTHO05D008639 9.7e-25 117.5 187 51.9
MELO3C025896.2 Cucumis melo HOM05D007264 ORTHO05D008639 6.3e-24 114.8 173 50.9
PGR119G0519 Punica granatum HOM05D007264 ORTHO05D008639 6.3e-24 114.8 137 57.7
MSTRG.11098 Avicennia marina HOM05D007264 ORTHO05D008639 8.2e-24 114.4 99 65.7
FvH4_3g36880 Fragaria vesca HOM05D007264 ORTHO05D008639 8.2e-24 114.4 173 46.2
FAN11G3606 Fragaria x ananassa HOM05D007264 ORTHO05D008639 8.2e-24 114.4 173 46.2
Oeu002436.1 Olea europaea HOM05D007264 ORTHO05D008639 5.3e-23 111.7 146 54.1
QL01p030632 Quercus lobata HOM05D007264 ORTHO05D008639 5.3e-23 111.7 166 50.0
arahy.Tifrunner.gnm1.ann1.EHGE9H Arachis hypogaea HOM05D007264 ORTHO05D008639 6.9e-23 111.3 98 66.3
MBI14_g08028_MAGBIO Magnolia biondii HOM05D007264 ORTHO05D008639 6.9e-23 111.3 114 63.2
Cc01_g13240 Coffea canephora HOM05D007264 ORTHO05D008639 9.1e-23 110.9 158 48.7
Dinv17036 Davidia involucrata HOM05D007264 ORTHO05D008639 9.1e-23 110.9 173 47.4
Dinv42982 Davidia involucrata HOM05D007264 ORTHO05D008639 9.1e-23 110.9 173 47.4
Dinv43117 Davidia involucrata HOM05D007264 ORTHO05D008639 9.1e-23 110.9 173 47.4
Lsat_1_v5_gn_5_169441 Lactuca sativa HOM05D007264 ORTHO05D008639 1.2e-22 110.5 100 66.0
arahy.Tifrunner.gnm1.ann1.4DS88F Arachis hypogaea HOM05D007264 ORTHO05D008639 1.5e-22 110.2 98 65.3
Haze_24148 Corylus avellana HOM05D007264 ORTHO05D008639 1.5e-22 110.2 106 63.2
Lalb_Chr24g0394031 Lupinus albus HOM05D007264 ORTHO05D008639 1.5e-22 110.2 111 59.5
Oeu002437.1 Olea europaea HOM05D007264 ORTHO05D008639 1.5e-22 110.2 146 54.1
Nn8g40679 Nelumbo nucifera HOM05D007264 ORTHO05D008639 3.4e-22 109.0 91 69.2
Sed0006840 Sechium edule HOM05D007264 ORTHO05D008639 3.4e-22 109.0 165 48.5
TAR623G1366 Trochodendron aralioides HOM05D007264 ORTHO05D008639 3.4e-22 109.0 109 63.3
vmacro03038 Vaccinium macrocarpon HOM05D007264 ORTHO05D008639 4.5e-22 108.6 172 49.4
Gohir.A07G099900 Gossypium hirsutum HOM05D007264 ORTHO05D008639 1.0e-21 107.5 156 47.4
Gorai.001G112100 Gossypium raimondii HOM05D007264 ORTHO05D008639 1.0e-21 107.5 98 63.3
Thecc.09G317100 Theobroma cacao HOM05D007264 ORTHO05D008639 1.0e-21 107.5 98 63.3
CSS0034107 Camellia sinensis var. sinensis HOM05D007264 ORTHO05D008639 1.7e-21 106.7 173 50.3
TAR560G0010 Trochodendron aralioides HOM05D007264 ORTHO05D008639 1.7e-21 106.7 173 48.6
Cfa011538 Carpinus fangiana HOM05D007264 ORTHO05D008639 2.2e-21 106.3 165 47.3
TWI79G0692 Tripterygium wilfordii HOM05D007264 ORTHO05D008639 2.9e-21 105.9 169 49.7
Ciclev10029397m.g Citrus clementina HOM05D007264 ORTHO05D008639 3.8e-21 105.5 130 50.0
CsaV3_6G016660 Cucumis sativus L. HOM05D007264 ORTHO05D008639 3.8e-21 105.5 151 50.3
Gohir.D07G104200 Gossypium hirsutum HOM05D007264 ORTHO05D008639 5.0e-21 105.1 155 48.4
SGA_v2.0_scaffold111G31536 Striga asiatica HOM05D007264 ORTHO05D008639 8.5e-21 104.4 170 45.3
COL.COLO4_18565 Corchorus olitorius HOM05D007264 ORTHO05D008639 1.1e-20 104.0 174 44.8
ATR0559G356 Amborella trichopoda HOM05D007264 ORTHO05D008639 3.2e-20 102.4 111 59.5
Prupe.6G071500 Prunus persica HOM05D007264 ORTHO05D008639 4.2e-20 102.1 86 67.4
BcaC03g18293 Brassica carinata HOM05D007264 ORTHO05D008639 7.2e-20 101.3 173 41.0
C02p63690 Brassica napus HOM05D007264 ORTHO05D008639 7.2e-20 101.3 173 41.0
AUR62020022 Chenopodium quinoa HOM05D007264 ORTHO05D008639 9.4e-20 100.9 118 60.2
ECA248G2900 Erigeron canadensis HOM05D007264 ORTHO05D008639 9.4e-20 100.9 100 60.0
AL41U10070 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 1.2e-19 100.5 174 44.3
AL4G23740 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 1.2e-19 100.5 174 44.3
PSO339G5862 Papaver somniferum HOM05D007264 ORTHO05D008639 1.2e-19 100.5 164 45.7
BolC2t12437H Brassica oleracea HOM05D007264 ORTHO05D008639 1.6e-19 100.1 134 45.5
Nn2g13417 Nelumbo nucifera HOM05D007264 ORTHO05D008639 2.1e-19 99.8 91 65.9
Hund18892 Selenicereus undatus HOM05D007264 ORTHO05D008639 2.7e-19 99.4 93 66.7
MD03G1086900 Malus domestica HOM05D007264 ORTHO05D008639 4.7e-19 98.6 108 59.3
MD11G1096000 Malus domestica HOM05D007264 ORTHO05D008639 4.7e-19 98.6 151 49.0
Medtr1g071380 Medicago truncatula HOM05D007264 ORTHO05D008639 1.4e-18 97.1 93 60.2
Glyma.13G338500 Glycine max HOM05D007264 ORTHO05D008639 3.0e-18 95.9 96 58.3
Medtr2g097680 Medicago truncatula HOM05D007264 ORTHO05D008639 3.0e-18 95.9 164 44.5
BraA02t09285Z Brassica rapa HOM05D007264 ORTHO05D008639 3.9e-18 95.5 79 63.3
CARHR122460 Cardamine hirsuta HOM05D007264 ORTHO05D008639 6.7e-18 94.7 109 56.0
PSO513G0105 Papaver somniferum HOM05D007264 ORTHO05D008639 6.7e-18 94.7 168 42.9
CiPaw.14G066400 Carya illinoinensis HOM05D007264 ORTHO05D008639 8.8e-18 94.4 175 42.9
Carub.0004s1020 Capsella rubella HOM05D007264 ORTHO05D008639 2.0e-17 93.2 93 57.0
ClCG02G019960 Citrullus lanatus HOM05D007264 ORTHO05D008639 2.0e-17 93.2 165 43.6
A02p43580 Brassica napus HOM05D007264 ORTHO05D008639 2.6e-17 92.8 175 38.9
AT2G29180 Arabidopsis thaliana HOM05D007264 ORTHO05D008639 5.7e-17 91.7 172 42.4
DCAR_005951 Daucus carota HOM05D007264 ORTHO05D008639 2.2e-16 89.7 154 44.8
GSVIVG01024917001 Vitis vinifera HOM05D007264 ORTHO05D008639 2.2e-16 89.7 109 56.9
BcaB01g03133 Brassica carinata HOM05D007264 ORTHO05D008639 8.2e-16 87.8 112 55.4
Manes.01G170100 Manihot esculenta HOM05D007264 ORTHO05D008639 1.4e-15 87.0 96 56.2
HanXRQChr01g0010441 Helianthus annuus HOM05D007264 ORTHO05D008639 1.8e-15 86.7 111 55.0
Sabra16G0147800 Salix brachista HOM05D007264 ORTHO05D008639 2.4e-15 86.3 174 37.9
Aa31LG5G7130 Aethionema arabicum HOM05D007264 ORTHO05D008639 4.1e-15 85.5 70 70.0
Actinidia33776 Actinidia chinensis HOM05D007264 ORTHO05D008639 5.3e-15 85.1 116 51.7
Lj3g0004900 Lotus japonicus HOM05D007264 ORTHO05D008639 5.3e-15 85.1 99 52.5
Sc25g0001650 Simmondsia chinensis HOM05D007264 ORTHO05D008639 5.3e-15 85.1 172 44.2
Glyma.15G035800 Glycine max HOM05D007264 ORTHO05D008639 6.9e-15 84.7 95 56.8
Phvul.L007743 Phaseolus vulgaris HOM05D007264 ORTHO05D008639 9.1e-15 84.3 101 55.4
VMungo1080G0594 Vigna mungo HOM05D007264 ORTHO05D008639 2.0e-14 83.2 99 52.5
THA.LOC104800684 Tarenaya hassleriana HOM05D007264 ORTHO05D008639 2.6e-14 82.8 73 64.4
Ah.15g098550 Amaranthus hybridus HOM05D007264 ORTHO05D008639 3.4e-14 82.4 137 47.4
Potri.001G243500 Populus trichocarpa HOM05D007264 ORTHO05D008639 3.4e-14 82.4 160 36.9
AUR62001749 Chenopodium quinoa HOM05D007264 ORTHO05D008639 5.9e-14 81.6 151 45.0
TPR.G6833 Trifolium pratense HOM05D007264 ORTHO05D008639 5.9e-14 81.6 80 57.5
unitig_899.g15261 Utricularia gibba HOM05D007264 ORTHO05D008639 7.7e-14 81.3 76 64.5
Cpa.g.sc81.107 Carica papaya HOM05D007264 ORTHO05D008639 1.0e-13 80.9 176 40.3
CDE04G3075 Ceratophyllum demersum HOM05D007264 ORTHO05D008639 1.7e-13 80.1 173 43.9
Duzib168G0085 Durio zibethinus HOM05D007264 ORTHO05D008639 1.7e-13 80.1 97 49.5
Aqoxy1G00887 Aquilegia oxysepala HOM05D007264 ORTHO05D008639 2.2e-13 79.7 98 54.1
Sp4g11990 Schrenkiella parvula HOM05D007264 ORTHO05D008639 2.9e-13 79.3 187 34.8
Atru.chr3.3962 Acer truncatum HOM05D007264 ORTHO05D008639 8.5e-13 77.8 133 43.6
CANSAT54G1805 Cannabis sativa HOM05D007264 ORTHO05D008639 8.0e-11 71.2 174 40.2
Psat5g287960 Pisum sativum HOM05D007264 ORTHO05D008639 3.9e-10 68.9 92 50.0
TAR369G0859 Trochodendron aralioides HOM05D007264 ORTHO05D008639 2.8e-08 62.8 115 46.1
Os03g0271500 Oryza sativa ssp. japonica HOM05D016300 ORTHO05D008639 3.1e-07 59.3 81 48.1
Pp3c15_10400 Physcomitrium patens HOM05D007264 ORTHO05D008639 3.5e-06 55.8 99 39.4
Zm00001eb299600 Zea mays HOM05D016300 ORTHO05D008639 4.5e-06 55.5 63 58.7
Zm00001eb299620 Zea mays HOM05D016300 ORTHO05D008639 4.5e-06 55.5 63 58.7
Zm00001eb440750 Zea mays HOM05D016300 ORTHO05D008639 4.5e-06 55.5 63 58.7


User provided reference genes

Program Settings