Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g009200.3 Solanum lycopersicum HOM05D001014 ORTHO05D000896 6.9e-111 404.1 215 100.0
Sopen05g004920 Solanum pennellii HOM05D001014 ORTHO05D000896 8.0e-83 310.8 202 78.7
PGSC0003DMG400014573 Solanum tuberosum HOM05D001014 ORTHO05D000896 1.0e-77 293.9 202 77.2
Sopen04g002400 Solanum pennellii HOM05D001014 ORTHO05D000896 3.9e-37 159.1 197 49.7
Solyc04g007340.4 Solanum lycopersicum HOM05D001014 ORTHO05D000896 5.6e-36 155.2 182 52.2
Nitab4.5_0004981g0010 Nicotiana tabacum HOM05D001014 ORTHO05D000896 1.6e-35 153.7 209 48.3
Nitab4.5_0000057g0150 Nicotiana tabacum HOM05D001014 ORTHO05D000896 5.8e-33 145.2 208 48.1
Nitab4.5_0000057g0140 Nicotiana tabacum HOM05D001014 ORTHO05D000896 1.1e-31 141.0 178 52.8
Nitab4.5_0004981g0030 Nicotiana tabacum HOM05D001014 ORTHO05D000896 1.9e-31 140.2 177 52.5
CAN.G610.63 Capsicum annuum HOM05D001014 ORTHO05D000896 9.2e-31 137.9 187 51.3
CSS0046084 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 6.2e-27 125.2 181 46.4
PGSC0003DMG400005977 Solanum tuberosum HOM05D001014 ORTHO05D000896 6.9e-26 121.7 207 41.5
Dinv21059 Davidia involucrata HOM05D001014 ORTHO05D000896 2.6e-25 119.8 208 45.2
Sopen04g002410 Solanum pennellii HOM05D001014 ORTHO05D000896 3.8e-24 115.9 209 39.2
Solyc04g007350.3 Solanum lycopersicum HOM05D001014 ORTHO05D000896 8.4e-24 114.8 208 39.4
MSTRG.2226 Avicennia marina HOM05D001014 ORTHO05D000896 1.4e-23 114.0 187 40.1
Peaxi162Scf00564g00315 Petunia axillaris HOM05D001014 ORTHO05D000896 2.4e-23 113.2 194 42.8
Cc11_g09900 Coffea canephora HOM05D001014 ORTHO05D000896 3.2e-23 112.8 175 42.9
MSTRG.13545 Avicennia marina HOM05D001014 ORTHO05D000896 5.4e-23 112.1 191 42.4
Lsat_1_v5_gn_8_40440 Lactuca sativa HOM05D001014 ORTHO05D000896 2.1e-22 110.2 170 44.7
Oeu057728.1 Olea europaea HOM05D001014 ORTHO05D000896 1.3e-21 107.5 180 38.3
Peaxi162Scf00753g00218 Petunia axillaris HOM05D001014 ORTHO05D000896 5.1e-21 105.5 217 37.8
HanXRQChr17g0567451 Helianthus annuus HOM05D001014 ORTHO05D000896 1.5e-20 104.0 173 43.4
SGA_v2.0_scaffold14G06882 Striga asiatica HOM05D001014 ORTHO05D000896 2.5e-20 103.2 187 37.4
MSTRG.7656 Avicennia marina HOM05D001014 ORTHO05D000896 3.3e-20 102.8 185 39.5
Hma1.2p1_1875F.1_g306270 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 3.3e-20 102.8 209 38.3
Lsat_1_v5_gn_4_16300 Lactuca sativa HOM05D001014 ORTHO05D000896 4.3e-20 102.4 165 40.0
Lj3A1013G40 Lonicera japonica HOM05D001014 ORTHO05D000896 1.6e-19 100.5 196 38.8
Prupe.1G313700 Prunus persica HOM05D001014 ORTHO05D000896 6.2e-19 98.6 189 41.3
vmacro10572 Vaccinium macrocarpon HOM05D001014 ORTHO05D000896 6.2e-19 98.6 173 41.6
Actinidia38375 Actinidia chinensis HOM05D001014 ORTHO05D000896 1.8e-18 97.1 170 41.2
Aqoxy3G00254 Aquilegia oxysepala HOM05D001014 ORTHO05D000896 1.8e-18 97.1 165 40.0
TAR622G0562 Trochodendron aralioides HOM05D001014 ORTHO05D000896 1.8e-18 97.1 178 39.3
Thecc.02G225600 Theobroma cacao HOM05D001014 ORTHO05D000896 5.3e-18 95.5 205 35.1
unitig_699.g19518 Utricularia gibba HOM05D001014 ORTHO05D000896 5.3e-18 95.5 206 37.9
Rhsim09G0105900 Rhododendron simsii HOM05D001014 ORTHO05D000896 9.0e-18 94.7 178 39.3
ClCG08G004930 Citrullus lanatus HOM05D001014 ORTHO05D000896 1.2e-17 94.4 220 34.5
MELO3C011520.2 Cucumis melo HOM05D001014 ORTHO05D000896 1.2e-17 94.4 221 33.9
unitig_699.g19486 Utricularia gibba HOM05D001014 ORTHO05D000896 1.2e-17 94.4 167 37.1
Haze_00622 Corylus avellana HOM05D001014 ORTHO05D000896 2.0e-17 93.6 182 37.4
MSTRG.852 Avicennia marina HOM05D001014 ORTHO05D000896 2.6e-17 93.2 190 35.3
TAR374G1372 Trochodendron aralioides HOM05D001014 ORTHO05D000896 3.4e-17 92.8 172 39.0
Actinidia16667 Actinidia chinensis HOM05D001014 ORTHO05D000896 4.5e-17 92.4 176 39.8
SalBow8G0611 Salvia bowleyana HOM05D001014 ORTHO05D000896 4.5e-17 92.4 205 34.1
SalBow8G2474 Salvia bowleyana HOM05D001014 ORTHO05D000896 4.5e-17 92.4 205 34.1
SGA_v2.0_scaffold38G14961 Striga asiatica HOM05D001014 ORTHO05D000896 5.8e-17 92.0 182 39.6
CsaV3_6G003250 Cucumis sativus L. HOM05D001014 ORTHO05D000896 9.9e-17 91.3 221 33.5
CAN.G25.19 Capsicum annuum HOM05D001014 ORTHO05D000896 1.3e-16 90.9 205 35.6
Duzib268G0769 Durio zibethinus HOM05D001014 ORTHO05D000896 1.3e-16 90.9 205 36.6
ClCG05G022580 Citrullus lanatus HOM05D001014 ORTHO05D000896 1.7e-16 90.5 217 34.6
ECA233G1708 Erigeron canadensis HOM05D001014 ORTHO05D000896 1.7e-16 90.5 201 36.3
Gohir.D12G146900 Gossypium hirsutum HOM05D001014 ORTHO05D000896 1.7e-16 90.5 197 34.5
CSS0023383 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 2.2e-16 90.1 174 39.7
ECA233G5273 Erigeron canadensis HOM05D001014 ORTHO05D000896 2.2e-16 90.1 163 39.3
MD13G1039500 Malus domestica HOM05D001014 ORTHO05D000896 3.8e-16 89.4 196 37.8
MD16G1040400 Malus domestica HOM05D001014 ORTHO05D000896 3.8e-16 89.4 218 34.4
Sed0012257 Sechium edule HOM05D001014 ORTHO05D000896 3.8e-16 89.4 172 41.3
Lj5g0027592 Lotus japonicus HOM05D001014 ORTHO05D000896 4.9e-16 89.0 170 41.2
Rhsim09G0106000 Rhododendron simsii HOM05D001014 ORTHO05D000896 4.9e-16 89.0 199 36.2
Sed0013545 Sechium edule HOM05D001014 ORTHO05D000896 8.4e-16 88.2 183 37.2
Lj6E755G0 Lonicera japonica HOM05D001014 ORTHO05D000896 1.1e-15 87.8 184 38.6
Nn2g11708 Nelumbo nucifera HOM05D001014 ORTHO05D000896 1.4e-15 87.4 210 33.8
Oeu034225.1 Olea europaea HOM05D001014 ORTHO05D000896 1.4e-15 87.4 141 39.7
Oeu034226.1 Olea europaea HOM05D001014 ORTHO05D000896 1.4e-15 87.4 141 39.7
Peaxi162Scf00564g00034 Petunia axillaris HOM05D001014 ORTHO05D000896 1.4e-15 87.4 169 40.2
CSS0007170 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 1.9e-15 87.0 180 38.9
Manes.14G104600 Manihot esculenta HOM05D001014 ORTHO05D000896 1.9e-15 87.0 232 34.1
MELO3C012261.2 Cucumis melo HOM05D001014 ORTHO05D000896 2.4e-15 86.7 216 31.9
Gohir.A12G142000 Gossypium hirsutum HOM05D001014 ORTHO05D000896 3.2e-15 86.3 197 34.0
Migut.E00358 Erythranthe guttata HOM05D001014 ORTHO05D000896 4.2e-15 85.9 240 33.8
Actinidia13656 Actinidia chinensis HOM05D001014 ORTHO05D000896 7.1e-15 85.1 197 35.5
Nn4g23898 Nelumbo nucifera HOM05D001014 ORTHO05D000896 7.1e-15 85.1 210 34.3
QL01p040747 Quercus lobata HOM05D001014 ORTHO05D000896 9.3e-15 84.7 191 35.1
arahy.Tifrunner.gnm1.ann1.7A1A6G Arachis hypogaea HOM05D001014 ORTHO05D000896 1.2e-14 84.3 167 36.5
Duzib248G1557 Durio zibethinus HOM05D001014 ORTHO05D000896 1.2e-14 84.3 200 34.5
CiPaw.05G239600 Carya illinoinensis HOM05D001014 ORTHO05D000896 1.6e-14 84.0 174 36.2
Nn8g39134 Nelumbo nucifera HOM05D001014 ORTHO05D000896 1.6e-14 84.0 220 35.5
arahy.Tifrunner.gnm1.ann1.YV2IKS Arachis hypogaea HOM05D001014 ORTHO05D000896 2.1e-14 83.6 167 36.5
SGA_v2.0_scaffold170G38780 Striga asiatica HOM05D001014 ORTHO05D000896 2.1e-14 83.6 180 36.1
FAN07G0276 Fragaria x ananassa HOM05D001014 ORTHO05D000896 3.5e-14 82.8 247 32.8
Gorai.008G158100 Gossypium raimondii HOM05D001014 ORTHO05D000896 4.6e-14 82.4 197 33.0
Dinv31620 Davidia involucrata HOM05D001014 ORTHO05D000896 6.0e-14 82.0 133 39.1
Migut.L01048 Erythranthe guttata HOM05D001014 ORTHO05D000896 1.0e-13 81.3 181 35.4
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 1.3e-13 80.9 220 34.5
MELO3C017319.2 Cucumis melo HOM05D001014 ORTHO05D000896 1.8e-13 80.5 173 31.8
FAN22G0030 Fragaria x ananassa HOM05D001014 ORTHO05D000896 1.8e-13 80.5 239 33.1
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 1.8e-13 80.5 174 36.2
Actinidia18925 Actinidia chinensis HOM05D001014 ORTHO05D000896 3.0e-13 79.7 191 36.6
GSVIVG01011869001 Vitis vinifera HOM05D001014 ORTHO05D000896 3.0e-13 79.7 198 34.3
RcHm_v2.0_Chr4g0434851 Rosa chinensis HOM05D001014 ORTHO05D000896 3.9e-13 79.3 198 33.8
arahy.Tifrunner.gnm1.ann1.2IFY3G Arachis hypogaea HOM05D001014 ORTHO05D000896 5.1e-13 79.0 210 34.8
FAN17G1652 Fragaria x ananassa HOM05D001014 ORTHO05D000896 5.1e-13 79.0 205 34.6
CiPaw.06G018500 Carya illinoinensis HOM05D001014 ORTHO05D000896 6.7e-13 78.6 178 36.0
TAR371G0250 Trochodendron aralioides HOM05D001014 ORTHO05D000896 1.1e-12 77.8 167 38.9
FvH4_4g27050 Fragaria vesca HOM05D001014 ORTHO05D000896 1.5e-12 77.4 204 34.3
vmacro10573 Vaccinium macrocarpon HOM05D001014 ORTHO05D000896 1.5e-12 77.4 169 39.1
DCAR_023646 Daucus carota HOM05D001014 ORTHO05D000896 1.9e-12 77.0 199 35.2
FAN12G3994 Fragaria x ananassa HOM05D001014 ORTHO05D000896 1.9e-12 77.0 204 34.3
HanXRQChr08g0213651 Helianthus annuus HOM05D001014 ORTHO05D000896 1.9e-12 77.0 168 35.1
Lalb_Chr06g0165981 Lupinus albus HOM05D001014 ORTHO05D000896 1.9e-12 77.0 165 36.4
Lj9A425T44 Lonicera japonica HOM05D001014 ORTHO05D000896 3.3e-12 76.3 174 35.1
Rhsim12G0085500 Rhododendron simsii HOM05D001014 ORTHO05D000896 4.3e-12 75.9 166 37.3
arahy.Tifrunner.gnm1.ann1.9KP105 Arachis hypogaea HOM05D001014 ORTHO05D000896 5.6e-12 75.5 183 37.2
arahy.Tifrunner.gnm1.ann1.PSIL1C Arachis hypogaea HOM05D001014 ORTHO05D000896 1.3e-11 74.3 211 33.2
Ciclev10016320m.g Citrus clementina HOM05D001014 ORTHO05D000896 1.3e-11 74.3 169 38.5
Ca_11149_v3 Cicer arietinum L. HOM05D001014 ORTHO05D000896 1.6e-11 73.9 163 38.0
Duzib251G0908 Durio zibethinus HOM05D001014 ORTHO05D000896 1.6e-11 73.9 230 32.2
Atru.chr11.147 Acer truncatum HOM05D001014 ORTHO05D000896 2.8e-11 73.2 223 36.3
THA.LOC104821917 Tarenaya hassleriana HOM05D001014 ORTHO05D000896 3.6e-11 72.8 237 31.2
arahy.Tifrunner.gnm1.ann1.I6N1I3 Arachis hypogaea HOM05D001014 ORTHO05D000896 4.8e-11 72.4 189 33.3
FAN12G1959 Fragaria x ananassa HOM05D001014 ORTHO05D000896 4.8e-11 72.4 204 35.3
Manes.06G066300 Manihot esculenta HOM05D001014 ORTHO05D000896 6.2e-11 72.0 236 33.9
Lalb_Chr02g0145861 Lupinus albus HOM05D001014 ORTHO05D000896 1.8e-10 70.5 169 36.7
Nn3g17894 Nelumbo nucifera HOM05D001014 ORTHO05D000896 1.8e-10 70.5 212 30.7
TWI79G1172 Tripterygium wilfordii HOM05D001014 ORTHO05D000896 1.8e-10 70.5 215 31.2
Sabra10G0092800 Salix brachista HOM05D001014 ORTHO05D000896 2.4e-10 70.1 177 35.6
CSS0036135 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 3.1e-10 69.7 169 36.7
ClCG06G014690 Citrullus lanatus HOM05D001014 ORTHO05D000896 4.0e-10 69.3 169 32.0
Hund26349 Selenicereus undatus HOM05D001014 ORTHO05D000896 4.0e-10 69.3 171 31.0
Gorai.009G347700 Gossypium raimondii HOM05D001014 ORTHO05D000896 5.3e-10 68.9 211 32.2
Dinv28122 Davidia involucrata HOM05D001014 ORTHO05D000896 9.0e-10 68.2 171 32.7
Nitab4.5_0000345g0120 Nicotiana tabacum HOM05D001014 ORTHO05D000896 9.0e-10 68.2 129 38.0
Gohir.A05G321700 Gossypium hirsutum HOM05D001014 ORTHO05D000896 1.5e-09 67.4 206 32.0
AL2G27180 Arabidopsis lyrata HOM05D001014 ORTHO05D000896 2.0e-09 67.0 189 33.9
VMungo0251G3271 Vigna mungo HOM05D001014 ORTHO05D000896 2.0e-09 67.0 167 31.7
Gohir.D05G324000 Gossypium hirsutum HOM05D001014 ORTHO05D000896 2.6e-09 66.6 201 31.3
Phvul.007G029200 Phaseolus vulgaris HOM05D001014 ORTHO05D000896 2.6e-09 66.6 183 33.9
HanXRQChr11g0341041 Helianthus annuus HOM05D001014 ORTHO05D000896 3.4e-09 66.2 112 45.5
VMungo0720G2796 Vigna mungo HOM05D001014 ORTHO05D000896 4.5e-09 65.9 181 34.3
BcaB05g24365 Brassica carinata HOM05D001014 ORTHO05D000896 5.8e-09 65.5 179 34.6
BcaC06g35217 Brassica carinata HOM05D001014 ORTHO05D000896 5.8e-09 65.5 169 30.8
C07p18560 Brassica napus HOM05D001014 ORTHO05D000896 5.8e-09 65.5 169 30.8
BolC7t42367H Brassica oleracea HOM05D001014 ORTHO05D000896 5.8e-09 65.5 169 30.8
AT1G68340 Arabidopsis thaliana HOM05D001014 ORTHO05D000896 7.6e-09 65.1 177 33.3
CDE06G1037 Ceratophyllum demersum HOM05D001014 ORTHO05D000896 7.6e-09 65.1 165 32.1
Sed0023333 Sechium edule HOM05D001014 ORTHO05D000896 9.9e-09 64.7 175 32.0
Glyma.10G272500 Glycine max HOM05D001014 ORTHO05D000896 1.3e-08 64.3 168 36.3
THA.LOC104808336 Tarenaya hassleriana HOM05D001014 ORTHO05D000896 1.3e-08 64.3 206 32.0
CARHR061050 Cardamine hirsuta HOM05D001014 ORTHO05D000896 1.7e-08 63.9 171 33.3
unitig_27.g25254 Utricularia gibba HOM05D001014 ORTHO05D000896 1.7e-08 63.9 73 56.2
BraA02t06556Z Brassica rapa HOM05D001014 ORTHO05D000896 2.2e-08 63.5 171 32.2
Lalb_Chr16g0382931 Lupinus albus HOM05D001014 ORTHO05D000896 4.9e-08 62.4 160 31.9
Nitab4.5_0004981g0020 Nicotiana tabacum HOM05D001014 ORTHO05D000896 6.4e-08 62.0 83 48.2
Phvul.002G317700 Phaseolus vulgaris HOM05D001014 ORTHO05D000896 8.4e-08 61.6 167 29.3
Potri.010G122700 Populus trichocarpa HOM05D001014 ORTHO05D000896 1.1e-07 61.2 205 33.2
Sp1g22850 Schrenkiella parvula HOM05D001014 ORTHO05D000896 1.9e-07 60.5 172 32.0
BcaB03g14038 Brassica carinata HOM05D001014 ORTHO05D000896 2.4e-07 60.1 172 33.1
A07p12560 Brassica napus HOM05D001014 ORTHO05D000896 3.2e-07 59.7 167 28.7
Lj2g0011517 Lotus japonicus HOM05D001014 ORTHO05D000896 3.2e-07 59.7 171 31.6
CDE12G0069 Ceratophyllum demersum HOM05D001014 ORTHO05D000896 4.2e-07 59.3 166 30.7
AUR62033217 Chenopodium quinoa HOM05D001014 ORTHO05D000896 4.2e-07 59.3 169 30.8
Lalb_Chr05g0217781 Lupinus albus HOM05D001014 ORTHO05D000896 9.3e-07 58.2 160 31.9
BraA07t29034Z Brassica rapa HOM05D001014 ORTHO05D000896 1.2e-06 57.8 168 29.2
Carub.0001s2515 Capsella rubella HOM05D001014 ORTHO05D000896 1.2e-06 57.8 182 30.8
AUR62021299 Chenopodium quinoa HOM05D001014 ORTHO05D000896 1.2e-06 57.8 168 30.4
Potri.012G055200 Populus trichocarpa HOM05D001014 ORTHO05D000896 2.1e-06 57.0 168 31.5
CARHR026120 Cardamine hirsuta HOM05D001014 ORTHO05D000896 2.7e-06 56.6 226 27.9
TPR.G4867 Trifolium pratense HOM05D001014 ORTHO05D000896 2.7e-06 56.6 162 35.2
BcaC05g26472 Brassica carinata HOM05D001014 ORTHO05D000896 3.5e-06 56.2 177 29.9
C02p24400 Brassica napus HOM05D001014 ORTHO05D000896 3.5e-06 56.2 176 29.5
BolC5t31248H Brassica oleracea HOM05D001014 ORTHO05D000896 3.5e-06 56.2 177 29.9
Psat1g036800 Pisum sativum HOM05D001014 ORTHO05D000896 3.5e-06 56.2 167 29.3
Carub.0002s1484 Capsella rubella HOM05D001014 ORTHO05D000896 4.6e-06 55.8 211 27.0
A09p39230 Brassica napus HOM05D001014 ORTHO05D000896 6.0e-06 55.5 175 30.3
C05p25150 Brassica napus HOM05D001014 ORTHO05D000896 6.0e-06 55.5 170 29.4
Cpa.g.sc3.489 Carica papaya HOM05D001014 ORTHO05D000896 6.0e-06 55.5 167 31.1
Atru.chr9.869 Acer truncatum HOM05D001014 ORTHO05D000896 7.9e-06 55.1 204 27.0
Actinidia35094 Actinidia chinensis HOM05D001014 ORTHO05D000896 7.9e-06 55.1 67 52.2
Sabra12G0038900 Salix brachista HOM05D001014 ORTHO05D000896 7.9e-06 55.1 166 27.7


User provided reference genes

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