Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g008840.2 Solanum lycopersicum HOM05D000187 ORTHO05D000230 2.8e-81 305.4 181 100.0
Sopen05g004600 Solanum pennellii HOM05D000187 ORTHO05D000230 2.4e-80 302.4 180 97.8
PGSC0003DMG400030571 Solanum tuberosum HOM05D000187 ORTHO05D000230 5.7e-74 281.2 181 94.5
Nitab4.5_0002112g0110 Nicotiana tabacum HOM05D000187 ORTHO05D000230 1.5e-58 229.9 189 64.6
Nitab4.5_0000694g0110 Nicotiana tabacum HOM05D000187 ORTHO05D000230 1.2e-55 220.3 192 63.5
Peaxi162Scf00179g00543 Petunia axillaris HOM05D000187 ORTHO05D000230 1.0e-43 180.6 184 55.4
Peaxi162Scf00564g00518 Petunia axillaris HOM05D000187 ORTHO05D000230 1.6e-31 140.2 185 45.9
Migut.E00374 Erythranthe guttata HOM05D000187 ORTHO05D000230 1.3e-22 110.5 192 38.0
MSTRG.13557 Avicennia marina HOM05D000187 ORTHO05D000230 9.5e-21 104.4 188 39.9
Dinv16139 Davidia involucrata HOM05D000187 ORTHO05D000230 9.5e-21 104.4 200 42.0
GSVIVG01011840001 Vitis vinifera HOM05D000187 ORTHO05D000230 7.5e-18 94.7 105 47.6
CSS0003605 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 1.9e-16 90.1 127 42.5
Cc11_g09640 Coffea canephora HOM05D000187 ORTHO05D000230 6.0e-15 85.1 181 35.9
Lsat_1_v5_gn_8_42581 Lactuca sativa HOM05D000187 ORTHO05D000230 3.0e-14 82.8 134 38.8
HanXRQChr08g0213251 Helianthus annuus HOM05D000187 ORTHO05D000230 3.9e-14 82.4 136 38.2
Nn4g23961 Nelumbo nucifera HOM05D000187 ORTHO05D000230 3.9e-14 82.4 218 35.8
Aqoxy3G00194 Aquilegia oxysepala HOM05D000187 ORTHO05D000230 1.1e-13 80.9 226 42.0
TAR622G0266 Trochodendron aralioides HOM05D000187 ORTHO05D000230 1.1e-13 80.9 214 33.2
CiPaw.15G135800 Carya illinoinensis HOM05D000187 ORTHO05D000230 4.3e-13 79.0 218 35.3
Lj2g0003886 Lotus japonicus HOM05D000187 ORTHO05D000230 4.3e-13 79.0 206 32.5
TAR535G0001 Trochodendron aralioides HOM05D000187 ORTHO05D000230 4.3e-13 79.0 211 40.3
Nn3g17958 Nelumbo nucifera HOM05D000187 ORTHO05D000230 7.3e-13 78.2 218 32.6
PGR083G2722 Punica granatum HOM05D000187 ORTHO05D000230 1.6e-12 77.0 231 33.8
Actinidia18917 Actinidia chinensis HOM05D000187 ORTHO05D000230 4.7e-12 75.5 219 41.1
CiPaw.16G089300 Carya illinoinensis HOM05D000187 ORTHO05D000230 4.7e-12 75.5 221 30.8
Duzib068G0915 Durio zibethinus HOM05D000187 ORTHO05D000230 4.7e-12 75.5 117 40.2
ECA233G2852 Erigeron canadensis HOM05D000033 ORTHO05D001688 8.1e-12 74.7 135 36.3
Dinv12227 Davidia involucrata HOM05D000187 ORTHO05D000230 1.1e-11 74.3 223 30.9
CSS0026987 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 1.4e-11 73.9 61 49.2
Duzib205G0431 Durio zibethinus HOM05D000187 ORTHO05D000230 1.4e-11 73.9 115 40.0
Thecc.03G042900 Theobroma cacao HOM05D000187 ORTHO05D000230 1.4e-11 73.9 117 38.5
Lalb_Chr24g0397961 Lupinus albus HOM05D000187 ORTHO05D000230 1.8e-11 73.6 68 54.4
TAR374G1571 Trochodendron aralioides HOM05D000187 ORTHO05D000230 2.4e-11 73.2 212 31.6
Hma1.2p1_2594F.1_g325080 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 3.1e-11 72.8 223 30.0
QL10p026760 Quercus lobata HOM05D000187 ORTHO05D000230 3.1e-11 72.8 226 36.7
unitig_699.g19523 Utricularia gibba HOM05D000187 ORTHO05D000230 3.1e-11 72.8 205 32.7
TPR.G28409 Trifolium pratense HOM05D000187 ORTHO05D000230 4.0e-11 72.4 212 31.1
unitig_62.g23725 Utricularia gibba HOM05D000187 ORTHO05D000230 4.0e-11 72.4 172 30.8
Actinidia35102 Actinidia chinensis HOM05D000187 ORTHO05D000230 5.2e-11 72.0 218 33.0
CDE08G0213 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 6.8e-11 71.6 193 30.1
TAR374G0613 Trochodendron aralioides HOM05D000187 ORTHO05D000230 6.8e-11 71.6 212 31.1
vmacro17698 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 8.9e-11 71.2 77 48.1
TPR.G12745 Trifolium pratense HOM05D000187 ORTHO05D000230 1.2e-10 70.9 60 55.0
CSS0006855 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 1.5e-10 70.5 227 37.9
CSS0000068 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 2.0e-10 70.1 227 37.9
Sc04g0003340 Simmondsia chinensis HOM05D000187 ORTHO05D000230 2.0e-10 70.1 60 53.3
Duzib084G0101 Durio zibethinus HOM05D000187 ORTHO05D000230 2.6e-10 69.7 65 50.8
Medtr8g106240 Medicago truncatula HOM05D000187 ORTHO05D000230 2.6e-10 69.7 213 29.6
Dinv31593 Davidia involucrata HOM05D000187 ORTHO05D000230 3.4e-10 69.3 62 50.0
Lalb_Chr14g0370951 Lupinus albus HOM05D000187 ORTHO05D000230 3.4e-10 69.3 213 42.3
GSVIVG01008343001 Vitis vinifera HOM05D000187 ORTHO05D000230 4.4e-10 68.9 110 36.4
Ciclev10020624m.g Citrus clementina HOM05D000187 ORTHO05D000230 5.8e-10 68.6 60 50.0
Gohir.A09G050000 Gossypium hirsutum HOM05D000187 ORTHO05D000230 5.8e-10 68.6 59 55.9
Gorai.006G058500 Gossypium raimondii HOM05D000187 ORTHO05D000230 5.8e-10 68.6 59 55.9
MBI09_g25153_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000230 5.8e-10 68.6 218 35.8
Manes.05G133100 Manihot esculenta HOM05D000187 ORTHO05D000230 5.8e-10 68.6 241 31.5
TWI81G0466 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 5.8e-10 68.6 229 30.6
TAR629G3526 Trochodendron aralioides HOM05D000187 ORTHO05D000230 5.8e-10 68.6 59 52.5
Rhsim08G0130100 Rhododendron simsii HOM05D000187 ORTHO05D000230 7.6e-10 68.2 60 50.0
PGSC0003DMG400005742 Solanum tuberosum HOM05D000187 ORTHO05D000230 7.6e-10 68.2 83 44.6
SGA_v2.0_scaffold170G38804 Striga asiatica HOM05D000187 ORTHO05D000230 7.6e-10 68.2 61 50.8
arahy.Tifrunner.gnm1.ann1.UBBI2A Arachis hypogaea HOM05D000187 ORTHO05D000230 9.9e-10 67.8 222 28.8
Gohir.D09G051200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 9.9e-10 67.8 59 55.9
CDE02G2914 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 1.7e-09 67.0 193 28.5
Gohir.D07G064200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 1.7e-09 67.0 115 36.5
Gorai.001G067700 Gossypium raimondii HOM05D000187 ORTHO05D000230 1.7e-09 67.0 115 36.5
Solyc03g118840.3 Solanum lycopersicum HOM05D000187 ORTHO05D000230 1.7e-09 67.0 83 43.4
Sopen03g037790 Solanum pennellii HOM05D000187 ORTHO05D000230 1.7e-09 67.0 83 43.4
Ah.11g045140 Amaranthus hybridus HOM05D000187 ORTHO05D000230 2.2e-09 66.6 60 50.0
Glyma.08G049400 Glycine max HOM05D000187 ORTHO05D000230 2.2e-09 66.6 61 49.2
arahy.Tifrunner.gnm1.ann1.X8S18P Arachis hypogaea HOM05D000187 ORTHO05D000230 2.9e-09 66.2 220 30.5
A08p30610 Brassica napus HOM05D000187 ORTHO05D000230 2.9e-09 66.2 228 27.6
BraA08t34992Z Brassica rapa HOM05D000187 ORTHO05D000230 2.9e-09 66.2 228 27.6
HanXRQChr17g0559771 Helianthus annuus HOM05D000187 ORTHO05D000230 3.8e-09 65.9 77 46.8
vmacro16433 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 3.8e-09 65.9 59 47.5
Cc04_g06840 Coffea canephora HOM05D000187 ORTHO05D000230 4.9e-09 65.5 99 40.4
FAN13G0080 Fragaria x ananassa HOM05D000187 ORTHO05D000230 4.9e-09 65.5 229 28.8
C08p18300 Brassica napus HOM05D000187 ORTHO05D000230 6.4e-09 65.1 222 29.3
BolC8t49464H Brassica oleracea HOM05D000187 ORTHO05D000230 6.4e-09 65.1 223 29.1
Cfa019728 Carpinus fangiana HOM05D000187 ORTHO05D000230 6.4e-09 65.1 231 29.0
Lsat_1_v5_gn_8_142020 Lactuca sativa HOM05D000187 ORTHO05D000230 6.4e-09 65.1 76 48.7
Lj5A153T49 Lonicera japonica HOM05D000187 ORTHO05D000230 6.4e-09 65.1 214 29.0
COL.COLO4_38530 Corchorus olitorius HOM05D000187 ORTHO05D000230 8.4e-09 64.7 47 57.4
FAN08G2200 Fragaria x ananassa HOM05D000187 ORTHO05D000230 8.4e-09 64.7 227 28.2
FAN18G3138 Fragaria x ananassa HOM05D000187 ORTHO05D000230 8.4e-09 64.7 227 28.2
Gohir.A07G059400 Gossypium hirsutum HOM05D000187 ORTHO05D000230 8.4e-09 64.7 74 41.9
MD14G1230200 Malus domestica HOM05D000187 ORTHO05D000230 8.4e-09 64.7 234 27.4
Carub.0001s1767 Capsella rubella HOM05D000187 ORTHO05D000230 1.1e-08 64.3 222 27.9
FvH4_5g16700 Fragaria vesca HOM05D000187 ORTHO05D000230 1.1e-08 64.3 228 28.1
Glyma.07G097700 Glycine max HOM05D000187 ORTHO05D000230 1.1e-08 64.3 72 45.8
Hma1.2p1_1614F.1_g293660 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 1.1e-08 64.3 95 37.9
Cpa.g.sc3.460 Carica papaya HOM05D000187 ORTHO05D000230 1.4e-08 63.9 59 49.2
Oeu000988.1 Olea europaea HOM05D000187 ORTHO05D000230 1.4e-08 63.9 89 42.7
Rhsim08G0130200 Rhododendron simsii HOM05D000187 ORTHO05D000230 1.4e-08 63.9 104 39.4
Zm00001eb360710 Zea mays HOM05D000187 ORTHO05D000230 1.9e-08 63.5 43 62.8
Psat1g035040 Pisum sativum HOM05D000187 ORTHO05D000230 2.4e-08 63.2 214 29.9
Rhsim12G0141500 Rhododendron simsii HOM05D000187 ORTHO05D000230 2.4e-08 63.2 101 34.7
Hund02352 Selenicereus undatus HOM05D000187 ORTHO05D000230 2.4e-08 63.2 60 48.3
TWI60G1712 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 2.4e-08 63.2 60 46.7
arahy.Tifrunner.gnm1.ann1.35GK0Y Arachis hypogaea HOM05D000187 ORTHO05D000230 3.2e-08 62.8 213 31.0
HPP92_008042 Vanilla planifolia HOM05D000187 ORTHO05D000230 3.2e-08 62.8 80 45.0
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 3.2e-08 62.8 77 45.5
BolC6t38499H Brassica oleracea HOM05D000187 ORTHO05D000230 4.2e-08 62.4 209 29.7
CARHR018580 Cardamine hirsuta HOM05D000187 ORTHO05D000230 4.2e-08 62.4 207 34.8
Dinv17509 Davidia involucrata HOM05D000187 ORTHO05D000230 4.2e-08 62.4 225 36.9
Glyma.05G241900 Glycine max HOM05D000187 ORTHO05D000230 4.2e-08 62.4 220 28.6
RcHm_v2.0_Chr7g0179401 Rosa chinensis HOM05D000187 ORTHO05D000230 4.2e-08 62.4 233 28.8
Zm00001eb156060 Zea mays HOM05D000187 ORTHO05D000230 4.2e-08 62.4 43 60.5
Atru.chr9.914 Acer truncatum HOM05D000187 ORTHO05D000230 5.4e-08 62.0 122 34.4
ECA233G0920 Erigeron canadensis HOM05D000187 ORTHO05D000230 5.4e-08 62.0 44 61.4
Oeu017512.1 Olea europaea HOM05D000187 ORTHO05D000230 5.4e-08 62.0 88 42.0
VMungo0251G2579 Vigna mungo HOM05D000187 ORTHO05D000230 5.4e-08 62.0 218 29.4
arahy.Tifrunner.gnm1.ann1.P10SDX Arachis hypogaea HOM05D000187 ORTHO05D000230 7.1e-08 61.6 210 30.5
MELO3C002110.2 Cucumis melo HOM05D000187 ORTHO05D000230 7.1e-08 61.6 224 30.4
Thhalv10007935m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 7.1e-08 61.6 60 48.3
Medtr6g082620 Medicago truncatula HOM05D000187 ORTHO05D000230 7.1e-08 61.6 43 62.8
Zm00001eb294850 Zea mays HOM05D000187 ORTHO05D000230 7.1e-08 61.6 84 39.3
PSO017G0577 Papaver somniferum HOM05D000187 ORTHO05D000230 9.3e-08 61.2 224 28.6
Phvul.002G325200 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 9.3e-08 61.2 218 29.4
Aa31LG4G4090 Aethionema arabicum HOM05D000187 ORTHO05D000230 1.2e-07 60.8 225 34.2
AL1G30330 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 1.2e-07 60.8 215 31.6
Haze_18740 Corylus avellana HOM05D000187 ORTHO05D000230 1.2e-07 60.8 60 48.3
PSO478G0597 Papaver somniferum HOM05D000187 ORTHO05D000230 1.2e-07 60.8 224 28.1
Sabra12G0037600 Salix brachista HOM05D000187 ORTHO05D000230 1.2e-07 60.8 43 55.8
Glyma.09G180300 Glycine max HOM05D000187 ORTHO05D000230 1.6e-07 60.5 228 39.0
Phvul.004G153501 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 1.6e-07 60.5 221 30.3
BraA07t30608Z Brassica rapa HOM05D000187 ORTHO05D000230 2.1e-07 60.1 209 28.7
CDE12G0243 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 2.7e-07 59.7 79 43.0
Eucgr.B00829 Eucalyptus grandis HOM05D000187 ORTHO05D000230 2.7e-07 59.7 233 32.2
FAN04G1576 Fragaria x ananassa HOM05D000187 ORTHO05D000230 2.7e-07 59.7 229 27.9
Nn3g21963 Nelumbo nucifera HOM05D000187 ORTHO05D000230 2.7e-07 59.7 43 60.5
Sp1g16030 Schrenkiella parvula HOM05D000187 ORTHO05D000230 2.7e-07 59.7 88 40.9
EL10Ac5g11483 Beta vulgaris HOM05D000187 ORTHO05D000230 3.5e-07 59.3 117 31.6
CDE06G1804 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 3.5e-07 59.3 202 27.7
HanXRQChr17g0559791 Helianthus annuus HOM05D000187 ORTHO05D000230 4.6e-07 58.9 43 60.5
Sed0023942 Sechium edule HOM05D000187 ORTHO05D000230 4.6e-07 58.9 117 35.0
SEGI_36205 Sequoiadendron giganteum HOM05D000187 ORTHO05D000230 4.6e-07 58.9 43 62.8
Solyc12g040390.3 Solanum lycopersicum HOM05D000187 ORTHO05D000230 4.6e-07 58.9 43 60.5
Sopen12g019840 Solanum pennellii HOM05D000187 ORTHO05D000230 4.6e-07 58.9 43 60.5
Sopen12g020000 Solanum pennellii HOM05D000187 ORTHO05D000230 4.6e-07 58.9 43 60.5
Nitab4.5_0001456g0140 Nicotiana tabacum HOM05D000187 ORTHO05D000230 6.0e-07 58.5 82 45.1
ClCG04G010890 Citrullus lanatus HOM05D000187 ORTHO05D000230 7.8e-07 58.2 224 29.5
CsaV3_1G006940 Cucumis sativus L. HOM05D000187 ORTHO05D000230 7.8e-07 58.2 225 29.3
Lj3A880T115 Lonicera japonica HOM05D000187 ORTHO05D000230 7.8e-07 58.2 54 50.0
Lalb_Chr16g0387321 Lupinus albus HOM05D000187 ORTHO05D000230 7.8e-07 58.2 55 45.5
Prupe.5G225100 Prunus persica HOM05D000187 ORTHO05D000230 7.8e-07 58.2 237 27.4
SMO329G0090 Selaginella moellendorffii HOM05D000187 ORTHO05D000230 7.8e-07 58.2 148 30.4
VMungo0464G0328 Vigna mungo HOM05D000187 ORTHO05D000230 7.8e-07 58.2 222 32.0
AUR62029913 Chenopodium quinoa HOM05D000187 ORTHO05D000230 1.0e-06 57.8 60 45.0
A07p29680 Brassica napus HOM05D000187 ORTHO05D000230 1.3e-06 57.4 214 28.0
CDE01G0556 Ceratophyllum demersum HOM05D000818 ORTHO05D002481 1.3e-06 57.4 45 55.6
Manes.01G015300 Manihot esculenta HOM05D000187 ORTHO05D000230 1.3e-06 57.4 93 34.4
Ca_29812_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 1.7e-06 57.0 43 58.1
Aa31LG7G3050 Aethionema arabicum HOM05D000187 ORTHO05D000230 2.3e-06 56.6 60 43.3
BcaB03g15727 Brassica carinata HOM05D000187 ORTHO05D000230 2.3e-06 56.6 204 28.9
SEGI_05883 Sequoiadendron giganteum HOM05D000187 ORTHO05D000230 2.3e-06 56.6 116 34.5
Cfa004035 Carpinus fangiana HOM05D000187 ORTHO05D000230 3.0e-06 56.2 60 46.7
Hma1.2p1_0313F.1_g121590 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 3.0e-06 56.2 74 39.2
MD06G1220700 Malus domestica HOM05D000187 ORTHO05D000230 3.0e-06 56.2 238 27.3
THA.LOC104812152 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 3.0e-06 56.2 243 33.3
unitig_27.g25257 Utricularia gibba HOM05D000187 ORTHO05D000230 3.0e-06 56.2 204 27.5
C06p47910 Brassica napus HOM05D000187 ORTHO05D000230 3.9e-06 55.8 228 26.8
FvH4_1g01850 Fragaria vesca HOM05D000187 ORTHO05D000230 3.9e-06 55.8 46 52.2
FAN19G2493 Fragaria x ananassa HOM05D003981 ORTHO05D003666 3.9e-06 55.8 46 52.2
FAN28G2724 Fragaria x ananassa HOM05D000187 ORTHO05D000230 3.9e-06 55.8 46 52.2
MD02G1016500 Malus domestica HOM05D000187 ORTHO05D000230 3.9e-06 55.8 68 44.1
Prupe.4G172400 Prunus persica HOM05D000187 ORTHO05D000230 3.9e-06 55.8 89 37.1
Sed0018606 Sechium edule HOM05D000187 ORTHO05D000230 3.9e-06 55.8 224 29.0
BolC6t39826H Brassica oleracea HOM05D000187 ORTHO05D000230 5.1e-06 55.5 230 26.5
AUR62033794 Chenopodium quinoa HOM05D000187 ORTHO05D000230 5.1e-06 55.5 117 30.8
CsaV3_4G033350 Cucumis sativus L. HOM05D001511 ORTHO05D009027 5.1e-06 55.5 42 54.8
Thhalv10018747m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 5.1e-06 55.5 240 27.1
Medtr1g019200 Medicago truncatula HOM05D000187 ORTHO05D000230 5.1e-06 55.5 60 43.3
Nn1g00510 Nelumbo nucifera HOM05D000187 ORTHO05D000230 5.1e-06 55.5 40 60.0
Potri.012G053800 Populus trichocarpa HOM05D000187 ORTHO05D000230 5.1e-06 55.5 106 33.0
BcaB03g15081 Brassica carinata HOM05D000187 ORTHO05D000230 6.6e-06 55.1 207 29.5
CSS0009934 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D005916 6.6e-06 55.1 53 49.1
CSS0024672 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D005916 6.6e-06 55.1 53 49.1
DCAR_023221 Daucus carota HOM05D000187 ORTHO05D000230 6.6e-06 55.1 234 28.2
Os05g0550000 Oryza sativa ssp. japonica HOM05D000187 ORTHO05D000230 6.6e-06 55.1 129 35.7
Potri.015G043900 Populus trichocarpa HOM05D000187 ORTHO05D000230 6.6e-06 55.1 106 33.0
Ca_13282_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 8.7e-06 54.7 60 41.7
Dinv20220 Davidia involucrata HOM05D000187 ORTHO05D000230 8.7e-06 54.7 74 37.8
Nn001s41355 Nelumbo nucifera HOM05D000187 ORTHO05D000230 8.7e-06 54.7 43 53.5
Nn1g00071 Nelumbo nucifera HOM05D000187 ORTHO05D000230 8.7e-06 54.7 49 53.1
Nn2g12219 Nelumbo nucifera HOM05D000187 ORTHO05D000230 8.7e-06 54.7 49 53.1


User provided reference genes

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