Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.4e-144 515.0 261 100.0
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 9.9e-104 380.6 189 100.0
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 7.1e-102 374.4 189 97.9
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 5.6e-99 364.8 189 95.2
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 3.7e-98 362.1 189 94.2
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 6.5e-87 324.7 189 87.3
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 1.4e-76 290.4 186 74.2
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 2.5e-75 286.2 186 75.3
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 3.3e-75 285.8 150 94.0
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 4.8e-74 282.0 189 73.5
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 2.4e-73 279.6 186 73.1
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 9.1e-73 277.7 186 71.0
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.5e-72 276.9 189 69.8
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.4e-72 275.8 189 77.2
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 2.2e-71 273.1 185 69.7
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.9e-70 270.0 187 71.1
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 5.5e-70 268.5 189 69.3
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 9.4e-70 267.7 186 68.8
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 6.1e-69 265.0 189 69.3
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.0e-68 264.2 189 68.3
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 3.0e-68 262.7 187 68.4
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.1e-68 261.9 189 68.8
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 5.1e-68 261.9 187 68.4
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.0e-67 260.0 187 67.4
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 9.7e-67 257.7 187 67.4
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.2e-66 256.5 191 66.0
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 2.8e-66 256.1 187 68.4
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.6e-61 240.4 189 65.1
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 1.8e-60 236.9 189 65.6
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.3e-60 236.5 202 60.9
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 6.7e-60 235.0 187 62.6
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 8.8e-60 234.6 189 60.8
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.1e-59 234.2 189 61.4
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 3.3e-59 232.6 189 64.6
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 4.4e-59 232.3 188 62.8
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 7.5e-59 231.5 188 62.2
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 9.7e-59 231.1 189 64.0
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 6.3e-58 228.4 189 64.0
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 6.3e-58 228.4 189 60.3
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 8.2e-58 228.0 189 63.5
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 8.2e-58 228.0 189 63.5
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 8.2e-58 228.0 189 63.5
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.8e-57 226.9 166 67.5
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 2.4e-57 226.5 189 61.9
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 3.1e-57 226.1 189 59.8
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 4.1e-57 225.7 190 60.5
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 5.3e-57 225.3 189 60.3
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 5.3e-57 225.3 189 60.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 5.3e-57 225.3 185 62.2
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 9.1e-57 224.6 189 59.3
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.6e-56 223.8 189 59.3
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.6e-56 223.8 189 62.4
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.6e-56 223.8 189 62.4
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 2.0e-56 223.4 189 62.4
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.5e-56 222.6 185 61.1
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.5e-56 222.6 185 61.1
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 3.5e-56 222.6 189 61.9
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 5.9e-56 221.9 185 60.5
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 7.7e-56 221.5 195 59.5
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.0e-55 221.1 189 60.3
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.0e-55 221.1 186 59.1
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.0e-55 221.1 186 60.2
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.0e-55 221.1 188 59.0
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.3e-55 220.7 182 60.4
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.3e-55 220.7 187 60.4
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.7e-55 220.3 189 63.5
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.2e-55 219.9 189 58.7
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 3.8e-55 219.2 189 61.4
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 5.0e-55 218.8 189 61.9
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 5.0e-55 218.8 189 61.9
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 5.0e-55 218.8 189 63.0
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 6.5e-55 218.4 189 59.3
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 6.5e-55 218.4 185 60.5
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 6.5e-55 218.4 189 63.5
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 8.5e-55 218.0 185 56.8
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.9e-54 216.9 189 58.7
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 2.5e-54 216.5 189 57.7
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.5e-54 216.5 189 57.7
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 3.2e-54 216.1 174 62.1
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.2e-54 215.7 189 57.7
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 4.2e-54 215.7 185 61.1
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 4.2e-54 215.7 189 58.2
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 5.5e-54 215.3 189 58.2
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 7.2e-54 214.9 189 56.6
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 7.2e-54 214.9 185 59.5
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 9.4e-54 214.5 191 57.6
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.7e-53 213.0 177 59.9
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.7e-53 212.2 189 57.1
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 6.1e-53 211.8 185 61.1
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.0e-52 211.1 185 59.5
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.4e-52 210.7 189 58.7
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.4e-52 210.7 185 59.5
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.8e-52 210.3 189 58.2
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 6.8e-52 208.4 185 58.9
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 1.2e-51 207.6 185 58.4
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.0e-51 206.8 184 58.7
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 2.0e-51 206.8 185 58.9
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 2.0e-51 206.8 185 57.8
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.4e-51 206.1 182 59.3
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 3.4e-51 206.1 182 59.3
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 4.4e-51 205.7 220 53.6
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 5.7e-51 205.3 152 65.1
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 5.7e-51 205.3 187 56.1
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 5.7e-51 205.3 187 56.1
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 7.5e-51 204.9 189 59.8
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.2e-50 203.4 187 52.9
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 2.2e-50 203.4 181 58.6
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 3.1e-49 199.5 186 52.7
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 5.4e-49 198.7 186 54.8
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.0e-48 196.8 186 54.3
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.7e-47 193.7 186 54.3
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 5.0e-47 192.2 210 50.5
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.0e-47 192.2 172 59.3
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.2e-43 181.0 184 48.4
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 2.0e-43 180.3 168 57.7
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.3e-42 177.6 215 48.4
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.2e-42 176.8 151 59.6
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 7.0e-41 171.8 187 45.5
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 9.2e-41 171.4 185 46.5
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.0e-40 170.2 185 52.4
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 2.9e-39 166.4 189 54.0
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.1e-38 164.5 150 57.3
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 6.4e-34 148.7 185 42.2
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 4.1e-33 146.0 187 39.0
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.2e-32 144.4 154 53.9
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.7e-31 140.6 185 41.1
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.9e-31 139.4 151 52.3
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.4e-25 120.9 106 61.3
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.0e-23 114.8 115 53.0
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.3e-22 109.4 119 48.7
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 7.3e-22 108.6 100 57.0
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.2e-19 101.3 154 40.9
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.2e-19 101.3 169 34.3
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 7.5e-19 98.6 124 41.9
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.2e-16 91.3 106 43.4
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 2.7e-16 90.1 188 33.0
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 7.8e-16 88.6 73 56.2
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 2.3e-15 87.0 83 59.0
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 2.1e-13 80.5 67 56.7
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 3.1e-12 76.6 71 53.5
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 5.4e-09 65.9 175 26.9
Nitab4.5_0000011g0270 Nicotiana tabacum HOM05D005619 ORTHO05D006696 8.6e-07 58.5 29 82.8


User provided reference genes

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