Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 5.5e-237 823.9 420 100.0
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 3.3e-234 814.7 420 98.8
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 1.7e-230 802.4 420 96.7
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 2.8e-217 758.4 417 91.1
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 4.1e-208 728.0 424 87.3
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 3.7e-201 704.9 408 86.3
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 5.4e-192 674.5 415 79.0
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 9.1e-192 673.7 415 79.0
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 2.2e-185 652.5 484 72.3
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 1.4e-184 649.8 415 75.9
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 3.1e-184 648.7 408 76.5
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 1.5e-178 629.8 415 74.0
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 2.0e-178 629.4 415 74.7
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 7.5e-178 627.5 417 75.3
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 2.2e-177 625.9 420 74.3
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 2.0e-175 619.4 415 74.0
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 1.0e-174 617.1 415 74.0
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 3.0e-174 615.5 415 72.3
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 3.9e-174 615.1 408 74.3
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 5.0e-174 614.8 408 72.5
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.0e-174 614.8 415 72.5
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 6.6e-174 614.4 415 72.5
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 2.5e-173 612.5 462 67.1
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 4.3e-173 611.7 415 72.3
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 4.3e-173 611.7 412 72.8
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 1.2e-172 610.1 437 70.9
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 4.7e-172 608.2 408 73.0
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 1.4e-171 606.7 422 71.3
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 1.5e-170 603.2 412 72.6
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 2.6e-170 602.4 412 72.3
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 7.5e-170 600.9 412 71.1
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 7.5e-170 600.9 411 72.0
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 9.8e-170 600.5 415 70.6
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 3.7e-169 598.6 412 71.8
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 1.9e-168 596.3 421 70.1
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 3.2e-168 595.5 415 71.1
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 1.3e-166 590.1 455 65.9
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 2.3e-166 589.3 415 69.9
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 1.9e-165 586.3 414 69.6
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 5.6e-165 584.7 411 69.3
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.6e-165 584.7 458 65.7
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 1.2e-164 583.6 461 65.3
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 2.1e-164 582.8 412 69.4
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 2.8e-164 582.4 412 69.2
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 3.1e-163 578.9 415 68.0
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 6.8e-163 577.8 403 71.2
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 2.6e-162 575.9 414 69.1
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 3.4e-162 575.5 407 69.5
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 7.5e-162 574.3 408 69.1
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 1.3e-161 573.5 415 68.0
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 1.7e-161 573.2 405 69.9
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 1.7e-161 573.2 415 67.2
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 2.2e-161 572.8 414 68.1
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 4.9e-161 571.6 409 68.2
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 6.4e-161 571.2 418 69.1
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 6.4e-161 571.2 409 69.2
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 6.4e-161 571.2 415 68.9
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 1.9e-160 569.7 415 66.7
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 4.1e-160 568.5 415 67.2
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 7.1e-160 567.8 415 67.0
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 2.1e-159 566.2 409 67.5
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 4.6e-159 565.1 415 66.5
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 4.6e-159 565.1 415 68.0
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 6.0e-159 564.7 421 66.0
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 1.3e-158 563.5 402 69.4
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 5.1e-158 561.6 412 66.3
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 7.3e-157 557.8 444 63.7
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 1.6e-156 556.6 444 63.1
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 2.8e-156 555.8 444 62.8
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 6.2e-156 554.7 415 68.0
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 8.9e-155 550.8 405 68.9
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 4.4e-154 548.5 416 65.6
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 1.3e-153 547.0 415 67.5
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 4.1e-152 542.0 445 63.8
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 2.1e-151 539.7 415 67.0
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 6.0e-151 538.1 421 64.1
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 3.9e-150 535.4 415 63.9
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 4.7e-148 528.5 439 63.6
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 6.2e-148 528.1 420 64.5
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 1.2e-146 523.9 408 65.0
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 2.0e-146 523.1 380 69.2
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 1.3e-145 520.4 446 59.6
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 3.8e-145 518.8 454 58.4
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 1.2e-143 513.8 408 63.7
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 3.5e-143 512.3 423 60.5
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 3.0e-142 509.2 407 64.4
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 1.5e-141 506.9 341 74.8
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.9e-141 506.5 412 63.6
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 4.3e-141 505.4 333 75.1
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 5.6e-141 505.0 409 59.2
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 2.1e-140 503.1 442 59.3
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 4.8e-140 501.9 420 60.5
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.2e-138 497.3 407 60.2
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 1.3e-134 483.8 360 66.1
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 1.4e-128 463.8 301 76.7
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 1.3e-126 457.2 329 68.7
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 2.0e-122 443.4 406 58.1
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.9e-117 426.8 282 74.5
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 6.3e-116 421.8 416 55.0
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 3.1e-115 419.5 315 68.9
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 3.3e-101 372.9 263 71.5
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 4.4e-101 372.5 284 64.8
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 5.7e-101 372.1 215 83.3
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 1.1e-99 367.9 418 46.2
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.2e-98 364.4 410 48.5
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 1.7e-97 360.5 263 69.2
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 9.4e-96 354.8 215 80.5
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 1.2e-95 354.4 405 47.7
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 9.1e-91 338.2 238 70.6
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 1.7e-84 317.4 319 54.2
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 4.5e-82 309.3 361 49.0
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 8.5e-81 305.1 242 62.4
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 6.3e-76 288.9 314 49.4
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 1.0e-73 281.6 293 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 5.0e-73 279.3 369 43.4
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 2.2e-60 237.3 225 56.0
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 5.4e-59 232.6 142 77.5
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 2.0e-58 230.7 395 36.7
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.6e-55 221.1 137 74.5
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 1.6e-55 221.1 166 65.7
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 6.8e-54 215.7 153 69.9
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.4e-51 208.0 125 80.0
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.7e-49 201.1 179 55.3
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 3.7e-44 183.3 405 32.8
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.6e-37 160.6 157 54.8
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 1.9e-35 154.5 306 32.4
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.2e-31 141.7 97 67.0
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.6e-31 141.4 108 68.5
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.1e-27 128.6 87 74.7
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 1.9e-24 117.9 90 63.3
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 3.1e-22 110.5 359 27.9
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 8.4e-20 102.4 95 50.5
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 1.2e-18 98.6 218 29.8
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.5e-18 97.1 79 59.5
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.0e-17 94.0 117 53.0
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.1e-17 93.2 65 64.6
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 3.7e-15 87.0 54 79.6
TPR.G3376 Trifolium pratense HOM05D004447 ORTHO05D005973 4.0e-06 57.0 267 21.3
Psat7g024280 Pisum sativum HOM05D004447 ORTHO05D005973 6.9e-06 56.2 267 22.8


User provided reference genes

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