Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.2e-192 676.4 361 100.0
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 1.6e-189 666.0 361 98.3
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 4.8e-189 664.5 361 98.3
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.9e-166 589.3 364 87.9
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 2.1e-144 516.2 336 83.6
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 2.0e-134 483.0 304 86.8
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 3.5e-131 472.2 364 70.6
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.5e-129 466.8 362 69.6
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 4.1e-124 448.7 363 66.9
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.7e-123 446.0 362 67.1
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 3.5e-123 445.7 360 67.2
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 8.6e-122 441.0 357 67.5
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 1.6e-120 436.8 349 69.6
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 1.4e-119 433.7 362 65.5
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 1.7e-117 426.8 360 63.6
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 8.3e-117 424.5 363 63.1
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 1.1e-116 424.1 363 63.1
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.4e-116 423.7 366 64.8
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.6e-115 420.2 363 63.6
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 3.5e-115 419.1 359 64.3
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 5.0e-114 415.2 362 61.6
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 3.3e-113 412.5 364 62.9
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 4.3e-113 412.1 368 62.2
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 5.6e-113 411.8 357 62.2
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 5.6e-113 411.8 364 61.8
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 7.3e-113 411.4 362 62.4
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 9.5e-113 411.0 362 62.4
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 2.8e-112 409.5 363 61.7
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 2.8e-112 409.5 361 61.2
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 8.0e-112 407.9 361 60.7
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.8e-111 406.8 363 60.6
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 6.8e-111 404.8 363 60.1
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 1.5e-110 403.7 406 56.7
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.5e-110 403.7 426 55.2
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.0e-110 403.3 362 60.8
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 2.6e-110 402.9 363 60.3
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.4e-110 402.5 357 60.8
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 4.4e-110 402.1 365 61.6
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 4.4e-110 402.1 357 60.5
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.8e-110 401.7 357 60.2
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.8e-110 401.7 357 60.2
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.7e-109 400.2 362 59.9
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.2e-109 399.8 357 60.2
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 4.9e-109 398.7 409 57.5
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 6.4e-109 398.3 360 60.8
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 8.3e-109 397.9 360 61.1
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 2.7e-107 392.9 358 60.3
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 4.6e-107 392.1 360 60.3
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.0e-107 391.7 357 59.1
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.3e-106 390.6 360 59.7
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 1.7e-106 390.2 363 60.1
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 2.3e-106 389.8 354 61.0
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 3.9e-106 389.0 361 60.4
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 3.9e-106 389.0 345 61.2
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 5.0e-106 388.7 365 59.7
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.9e-105 386.7 360 59.2
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 5.6e-105 385.2 363 57.9
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 5.6e-105 385.2 359 59.6
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 9.5e-105 384.4 365 60.3
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 3.6e-104 382.5 369 58.5
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.1e-103 380.9 364 59.6
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 5.2e-103 378.6 361 58.2
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 8.9e-103 377.9 363 57.6
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 2.6e-102 376.3 358 59.8
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.4e-102 375.6 329 64.1
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 4.4e-102 375.6 359 57.7
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.7e-101 372.5 356 58.7
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.4e-100 370.5 369 57.2
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 1.0e-98 364.4 341 58.9
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 1.7e-98 363.6 340 59.1
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.3e-98 363.2 358 56.7
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 8.6e-98 361.3 362 53.9
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.5e-97 359.8 359 55.4
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 2.6e-94 349.7 390 53.3
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 7.6e-94 348.2 362 54.1
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.3e-93 347.4 360 53.9
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 6.4e-93 345.1 360 53.3
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 8.4e-93 344.7 360 53.1
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 9.2e-92 341.3 362 55.0
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 3.5e-91 339.3 360 51.7
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.1e-89 334.3 360 52.2
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 2.5e-89 333.2 362 53.0
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 5.6e-89 332.0 360 51.7
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 5.6e-89 332.0 301 64.5
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 7.3e-89 331.6 344 52.6
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.6e-88 330.5 363 52.3
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.8e-88 329.7 360 53.1
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 8.1e-88 328.2 361 51.5
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 2.4e-87 326.6 365 53.7
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 2.0e-86 323.6 370 51.1
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 3.4e-86 322.8 365 52.3
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 1.3e-85 320.9 363 51.0
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 3.8e-85 319.3 363 50.7
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 5.4e-84 315.5 363 49.3
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 7.1e-84 315.1 359 50.4
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 7.1e-84 315.1 306 60.1
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 6.0e-83 312.0 303 59.1
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.3e-82 310.8 360 50.6
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.9e-81 307.0 362 48.9
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 4.3e-81 305.8 362 49.4
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 7.3e-81 305.1 296 57.8
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 9.6e-81 304.7 298 56.4
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 5.8e-78 295.4 362 47.5
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 2.2e-77 293.5 282 57.8
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.1e-76 291.2 317 53.6
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.4e-76 290.8 345 49.6
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 1.9e-76 290.4 344 50.0
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 9.3e-76 288.1 366 47.8
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 2.7e-75 286.6 340 49.4
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 3.9e-74 282.7 362 43.6
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 1.5e-70 270.8 344 48.0
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 3.0e-66 256.5 369 42.3
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 5.1e-66 255.8 377 41.1
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.6e-64 250.8 359 42.6
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 6.9e-63 245.4 236 59.3
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 7.6e-62 241.9 345 42.3
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.7e-61 240.7 345 42.6
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 2.9e-61 240.0 238 56.3
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 6.5e-61 238.8 246 56.1
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 8.4e-61 238.4 350 44.9
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 3.2e-60 236.5 271 52.0
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 9.3e-60 235.0 244 56.1
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.3e-56 224.6 355 40.8
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 2.5e-52 210.3 233 52.4
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.5e-49 201.1 273 48.0
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 6.3e-48 195.7 237 53.2
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 1.6e-43 181.0 338 36.7
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 2.6e-41 173.7 298 40.3
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 3.4e-38 163.3 363 32.0
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 1.8e-34 151.0 151 61.6
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 5.2e-34 149.4 128 61.7
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.1e-31 141.7 424 28.3
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 5.9e-30 136.0 130 51.5
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.7e-29 134.4 180 48.3
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 2.7e-27 127.1 372 29.0
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 8.0e-27 125.6 156 53.2
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 7.5e-17 92.4 270 30.7
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 5.9e-14 82.8 55 72.7
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 7.2e-12 75.9 56 62.5
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.8e-10 71.2 178 32.6
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 8.8e-10 68.9 56 57.1
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 9.8e-09 65.5 174 31.6


User provided reference genes

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