Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.3e-154 549.7 285 100.0
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.7e-152 542.7 285 98.6
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.8e-151 539.3 285 97.9
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.2e-141 505.8 285 91.6
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.9e-141 505.4 285 91.2
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 4.4e-137 491.5 285 89.5
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.5e-124 449.9 285 82.8
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 7.7e-118 427.6 285 77.9
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.0e-117 427.2 282 76.6
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.7e-117 426.4 282 76.2
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 3.8e-117 425.2 287 76.0
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 5.0e-117 424.9 284 76.8
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 5.5e-116 421.4 287 74.6
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 8.0e-115 417.5 283 75.3
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.3e-114 416.0 287 76.0
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 3.4e-113 412.1 289 73.4
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.2e-112 409.5 287 73.9
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 3.7e-112 408.7 289 74.4
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 3.7e-112 408.7 286 73.8
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 6.3e-112 407.9 281 74.7
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 8.3e-112 407.5 288 71.5
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.1e-111 407.1 282 72.0
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 4.1e-111 405.2 283 75.6
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 5.4e-111 404.8 283 74.2
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 9.2e-111 404.1 286 72.0
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.0e-110 402.9 281 71.5
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 4.5e-110 401.7 288 71.5
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.5e-110 401.7 281 72.2
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.7e-109 399.8 282 72.3
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 2.3e-109 399.4 286 72.7
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 5.0e-109 398.3 282 72.3
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.3e-108 395.6 292 70.9
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.6e-108 394.8 282 72.0
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 9.5e-108 394.0 282 71.6
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 9.5e-108 394.0 283 70.7
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 9.5e-108 394.0 285 71.9
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 9.5e-108 394.0 287 71.4
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.2e-107 393.7 282 72.0
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.6e-107 393.3 282 71.6
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.1e-107 392.9 288 70.8
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 2.1e-107 392.9 283 72.8
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.8e-107 392.5 283 70.7
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.4e-106 390.2 283 71.4
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.0e-106 389.0 275 72.0
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 4.0e-106 388.7 258 73.6
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 6.8e-106 387.9 282 70.9
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 8.9e-106 387.5 275 72.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 6.4e-104 381.3 276 68.5
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 6.4e-104 381.3 277 70.0
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.9e-103 379.8 280 69.6
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.9e-103 379.8 282 68.8
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-103 379.8 282 68.8
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.9e-103 379.8 282 68.8
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.9e-103 379.8 280 72.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 9.2e-103 377.5 282 68.8
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.2e-102 377.1 282 68.8
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.2e-102 377.1 282 67.4
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.0e-102 376.3 282 68.4
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.5e-102 375.6 285 68.4
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.0e-102 374.8 282 68.4
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 6.0e-102 374.8 271 70.1
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.8e-102 374.4 299 66.2
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 7.8e-102 374.4 280 67.1
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 7.8e-102 374.4 284 65.8
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.0e-101 374.0 244 75.4
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.0e-101 374.0 282 66.0
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.3e-101 372.9 271 69.4
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 3.0e-101 372.5 289 68.5
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 5.0e-101 371.7 282 66.3
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 6.6e-101 371.3 276 68.8
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 6.6e-101 371.3 282 66.0
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 8.6e-101 370.9 280 69.3
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 8.6e-101 370.9 226 78.8
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.1e-100 370.5 282 66.3
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.9e-100 369.8 288 66.0
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.5e-100 369.4 280 68.2
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 2.5e-100 369.4 282 68.1
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 2.5e-100 369.4 282 68.1
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 2.5e-100 369.4 282 68.1
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 7.3e-100 367.9 286 68.2
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 7.3e-100 367.9 226 79.2
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-99 367.1 282 67.7
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.6e-99 366.7 280 68.9
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.8e-99 365.9 288 66.0
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 3.6e-99 365.5 282 65.2
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 6.2e-99 364.8 280 68.6
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 6.2e-99 364.8 282 66.0
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 1.8e-98 363.2 284 65.5
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.3e-98 362.8 292 64.0
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 2.3e-98 362.8 283 66.8
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 5.2e-98 361.7 309 62.1
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 8.9e-98 360.9 282 67.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 8.9e-98 360.9 278 68.3
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.5e-97 360.1 290 65.5
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 5.8e-97 358.2 287 64.5
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.3e-96 357.1 216 81.0
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.7e-96 356.7 285 64.9
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.2e-96 356.3 232 75.0
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 6.4e-96 354.8 227 78.0
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.3e-93 347.1 274 66.4
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 3.0e-93 345.9 281 63.0
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.5e-92 342.8 288 61.8
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.5e-92 342.8 261 66.7
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 4.7e-91 338.6 277 63.5
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 5.8e-89 331.6 252 67.5
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.3e-88 330.5 226 74.8
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 2.2e-88 329.7 226 74.8
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.7e-88 328.9 288 59.4
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 6.4e-88 328.2 245 67.3
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 3.2e-87 325.9 230 70.0
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 3.2e-87 325.9 287 62.7
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 4.1e-87 325.5 280 61.8
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 6.0e-86 321.6 258 63.6
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 3.0e-85 319.3 212 78.3
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 8.9e-82 307.8 243 64.2
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.5e-81 307.0 290 57.6
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.0e-81 306.6 229 66.4
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.4e-81 305.4 236 65.7
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.2e-75 287.3 289 51.6
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.1e-74 284.3 239 61.9
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.7e-72 276.9 300 47.7
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.3e-69 266.5 263 52.5
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 6.2e-67 258.5 261 58.2
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.2e-63 245.7 218 64.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.6e-60 234.6 197 52.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.1e-59 231.5 197 52.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-58 231.1 197 51.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.4e-58 229.9 197 51.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.5e-55 218.8 148 70.3
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.5e-55 218.8 220 58.2
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.0e-54 215.3 233 55.4
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.9e-53 212.6 136 74.3
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-47 194.5 197 46.2
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.5e-47 193.4 137 68.6
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.0e-45 188.0 258 46.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.5e-44 184.1 171 60.8
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-37 159.8 186 47.8
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.9e-33 145.6 119 66.4
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.9e-32 143.3 183 39.9
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.4e-31 138.3 200 38.5
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.8e-29 134.0 83 79.5
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 6.7e-29 132.1 193 40.9
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.3e-28 129.8 206 43.7
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.4e-26 124.4 76 77.6
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.8e-26 124.0 220 43.6
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 4.5e-25 119.4 99 62.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 4.5e-25 119.4 99 62.6
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.3e-19 99.0 59 81.4
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.1e-18 96.7 58 79.3
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.1e-18 95.1 56 80.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-17 93.6 58 77.6
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.5e-15 87.0 91 46.2
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.2e-15 86.7 64 70.3
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.6e-14 84.3 54 75.9
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 3.4e-12 76.6 51 68.6
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 8.5e-08 62.0 60 58.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 8.5e-08 62.0 60 58.3
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 5.5e-07 59.3 90 41.1
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 5.5e-07 59.3 61 54.1
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 4.7e-06 56.2 46 58.7
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 8.0e-06 55.5 44 63.6


User provided reference genes

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