Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.2e-84 316.6 175 100.0
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 7.2e-82 307.4 175 97.1
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 2.3e-72 275.8 178 88.2
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 5.6e-42 174.9 181 63.5
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 9.5e-42 174.1 176 63.6
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 3.2e-37 159.1 181 61.3
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 6.4e-22 108.2 178 47.2
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 5.4e-21 105.1 197 44.7
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 5.4e-21 105.1 205 42.9
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 3.5e-20 102.4 184 47.8
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 6.0e-20 101.7 174 48.9
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 7.8e-20 101.3 183 45.4
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 3.0e-19 99.4 176 45.5
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 6.6e-19 98.2 185 43.2
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-18 97.4 181 40.3
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.1e-18 97.4 181 40.3
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.5e-18 96.3 182 44.5
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.3e-18 95.5 178 39.9
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 4.3e-18 95.5 199 41.7
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.6e-18 95.1 191 42.4
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 7.3e-18 94.7 193 39.9
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 9.5e-18 94.4 195 43.1
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 9.5e-18 94.4 195 43.1
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.2e-17 94.0 173 46.2
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.6e-17 93.6 193 40.4
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 2.1e-17 93.2 181 39.2
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 2.1e-17 93.2 180 39.4
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 2.1e-17 93.2 181 39.2
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 3.6e-17 92.4 177 41.8
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 4.7e-17 92.0 180 38.9
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 4.7e-17 92.0 191 42.4
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 6.2e-17 91.7 200 40.5
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 8.1e-17 91.3 181 38.1
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.4e-16 90.5 181 38.1
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.4e-16 90.5 181 38.1
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.4e-16 90.5 183 41.0
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.4e-16 90.5 177 44.1
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 1.4e-16 90.5 194 42.3
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-16 90.1 180 38.9
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.8e-16 90.1 181 38.1
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.8e-16 90.1 189 39.7
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 2.3e-16 89.7 176 43.2
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 4.0e-16 89.0 187 42.2
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 6.8e-16 88.2 187 40.6
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 6.8e-16 88.2 194 41.8
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 8.9e-16 87.8 178 38.8
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 8.9e-16 87.8 174 45.4
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-15 87.4 177 38.4
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.2e-15 87.4 171 41.5
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.0e-15 86.7 176 37.5
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.0e-15 86.7 176 37.5
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 2.0e-15 86.7 194 42.8
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.0e-15 86.7 182 37.9
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 3.4e-15 85.9 186 37.1
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 3.4e-15 85.9 186 37.1
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 3.4e-15 85.9 150 44.7
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 4.4e-15 85.5 183 37.7
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 4.4e-15 85.5 191 39.8
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 5.8e-15 85.1 201 38.8
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.8e-15 85.1 180 41.1
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.8e-15 85.1 179 40.2
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 5.8e-15 85.1 189 41.3
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 7.6e-15 84.7 203 39.4
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 9.9e-15 84.3 149 40.9
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 9.9e-15 84.3 172 41.9
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.3e-14 84.0 175 38.9
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.3e-14 84.0 181 36.5
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.7e-14 83.6 172 41.9
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 2.2e-14 83.2 186 35.5
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 2.2e-14 83.2 186 35.5
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.2e-14 83.2 202 35.6
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.9e-14 82.8 180 40.6
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 3.7e-14 82.4 157 42.7
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 3.7e-14 82.4 205 38.5
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.9e-14 82.0 78 55.1
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 4.9e-14 82.0 179 39.7
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 4.9e-14 82.0 175 39.4
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 6.4e-14 81.6 186 40.9
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 8.4e-14 81.3 152 38.2
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.1e-13 80.9 176 38.6
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.9e-13 80.1 193 39.4
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.9e-13 80.1 182 35.2
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.9e-13 80.1 182 35.2
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.9e-13 80.1 182 35.2
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.9e-13 80.1 185 35.7
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 2.4e-13 79.7 179 36.3
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.4e-13 79.7 188 40.4
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 4.1e-13 79.0 194 37.6
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.1e-13 79.0 177 41.2
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 5.4e-13 78.6 175 38.3
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 7.1e-13 78.2 171 36.3
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 7.1e-13 78.2 188 37.2
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 9.2e-13 77.8 186 38.2
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 9.2e-13 77.8 119 46.2
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.6e-12 77.0 173 39.3
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.6e-12 77.0 171 39.8
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 2.7e-12 76.3 199 36.2
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 2.7e-12 76.3 186 35.5
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.7e-12 76.3 161 41.6
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 3.5e-12 75.9 73 54.8
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 4.6e-12 75.5 126 42.9
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 7.8e-12 74.7 119 42.0
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 7.8e-12 74.7 86 48.8
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 7.8e-12 74.7 154 39.0
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 7.8e-12 74.7 160 38.8
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-11 74.3 179 36.9
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.0e-11 74.3 179 36.9
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.0e-11 74.3 185 36.2
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.0e-11 74.3 183 36.1
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.0e-11 74.3 206 36.4
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 1.0e-11 74.3 192 33.3
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.7e-11 73.6 180 37.2
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 1.7e-11 73.6 179 36.9
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 1.7e-11 73.6 179 36.9
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.0e-11 72.8 81 51.9
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 3.0e-11 72.8 190 37.4
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 5.1e-11 72.0 173 41.0
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 5.1e-11 72.0 167 39.5
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 6.6e-11 71.6 71 53.5
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 6.6e-11 71.6 81 51.9
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 8.6e-11 71.2 143 35.7
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.1e-10 70.9 125 40.0
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.1e-10 70.9 109 45.0
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.1e-10 70.9 180 36.7
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.1e-10 70.9 200 33.5
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.5e-10 69.7 182 37.9
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 3.3e-10 69.3 120 42.5
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 9.6e-10 67.8 189 33.9
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.6e-09 67.0 180 35.6
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 2.1e-09 66.6 135 39.3
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 2.8e-09 66.2 177 31.1
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 4.7e-09 65.5 178 37.6
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 6.2e-09 65.1 181 33.1
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.1e-08 64.3 184 31.0
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.4e-08 63.9 176 36.4
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 6.8e-08 61.6 165 33.9
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 8.9e-08 61.2 170 32.4
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 8.9e-08 61.2 179 35.8
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.5e-07 60.5 181 34.3
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.9e-06 56.2 178 33.7
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 6.4e-06 55.1 74 50.0
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 8.4e-06 54.7 169 34.3


User provided reference genes

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