Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 1.0e-53 213.4 129 100.0
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 4.7e-38 161.4 180 65.6
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 2.8e-35 152.1 180 52.8
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 1.4e-34 149.8 180 62.2
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 3.1e-34 148.7 180 51.7
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 1.2e-33 146.7 180 58.9
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 1.2e-33 146.7 180 50.6
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 1.2e-33 146.7 180 53.3
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 2.7e-33 145.6 180 51.1
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 3.5e-33 145.2 177 52.0
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 4.5e-33 144.8 180 48.3
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 4.5e-33 144.8 180 50.6
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 7.7e-33 144.1 180 50.0
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 7.7e-33 144.1 180 50.0
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.0e-32 143.7 172 52.3
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 1.0e-32 143.7 180 49.4
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.7e-32 142.9 180 49.4
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 2.3e-32 142.5 178 48.9
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 3.8e-32 141.7 180 47.2
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 5.0e-32 141.4 186 45.2
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 6.5e-32 141.0 180 49.4
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 8.6e-32 140.6 180 47.8
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 8.6e-32 140.6 180 47.8
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 8.6e-32 140.6 177 49.2
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.1e-31 140.2 180 49.4
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 1.1e-31 140.2 177 49.7
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.5e-31 139.8 181 48.1
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 1.9e-31 139.4 180 48.9
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 1.9e-31 139.4 183 46.4
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 1.9e-31 139.4 177 46.9
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 2.5e-31 139.0 180 50.6
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 3.2e-31 138.7 180 48.9
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 4.2e-31 138.3 180 48.9
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 4.2e-31 138.3 180 45.6
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 5.5e-31 137.9 179 46.4
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 7.2e-31 137.5 178 52.8
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 7.2e-31 137.5 178 46.6
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 7.2e-31 137.5 180 58.3
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 9.5e-31 137.1 178 51.1
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.2e-30 136.7 180 46.7
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 1.2e-30 136.7 184 46.2
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 1.6e-30 136.3 178 46.6
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.6e-30 136.3 178 46.1
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 1.6e-30 136.3 178 46.6
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 1.6e-30 136.3 175 46.3
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.6e-30 136.3 178 46.6
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 1.6e-30 136.3 178 46.6
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 1.6e-30 136.3 178 46.1
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 1.6e-30 136.3 179 46.9
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 1.6e-30 136.3 175 46.3
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 2.1e-30 136.0 175 46.3
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.1e-30 136.0 180 58.3
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 2.8e-30 135.6 180 46.7
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 2.8e-30 135.6 180 47.8
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 2.8e-30 135.6 180 47.8
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 2.8e-30 135.6 180 45.0
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 3.6e-30 135.2 180 45.0
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 3.6e-30 135.2 176 47.2
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 4.7e-30 134.8 180 44.4
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 4.7e-30 134.8 180 46.7
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 4.7e-30 134.8 171 48.0
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 4.7e-30 134.8 180 46.7
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 6.1e-30 134.4 179 47.5
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 6.1e-30 134.4 176 47.7
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 8.0e-30 134.0 180 47.8
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 1.0e-29 133.7 180 46.1
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.4e-29 133.3 178 45.5
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 1.8e-29 132.9 178 46.1
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 1.8e-29 132.9 178 46.1
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 1.8e-29 132.9 179 46.4
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 2.3e-29 132.5 178 47.2
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 3.0e-29 132.1 178 46.1
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 5.2e-29 131.3 180 50.0
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 5.2e-29 131.3 180 44.4
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 8.8e-29 130.6 177 44.1
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 1.2e-28 130.2 178 43.3
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.5e-28 129.8 180 43.3
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 2.0e-28 129.4 183 43.2
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 2.6e-28 129.0 180 44.4
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 3.4e-28 128.6 175 45.1
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 3.4e-28 128.6 179 44.7
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 3.4e-28 128.6 180 42.8
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 3.4e-28 128.6 179 47.5
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 5.7e-28 127.9 169 46.2
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 1.3e-27 126.7 175 44.6
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 2.8e-27 125.6 179 43.6
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 2.8e-27 125.6 177 41.8
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 3.7e-27 125.2 179 44.7
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 6.3e-27 124.4 177 45.8
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 8.3e-27 124.0 177 44.6
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 2.4e-26 122.5 180 45.6
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 3.1e-26 122.1 178 43.8
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 4.1e-26 121.7 179 41.9
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 4.1e-26 121.7 179 41.9
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 5.4e-26 121.3 146 50.0
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 7.0e-26 120.9 140 51.4
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 2.0e-25 119.4 178 49.4
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 4.5e-25 118.2 140 48.6
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 5.9e-25 117.9 140 51.4
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 2.9e-24 115.5 221 36.7
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 1.1e-23 113.6 219 36.1
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 1.5e-23 113.2 140 49.3
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 1.5e-23 113.2 177 37.9
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 8.0e-22 107.5 130 44.6
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 8.0e-22 107.5 176 48.3
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 1.5e-20 103.2 174 36.2
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 3.4e-20 102.1 180 35.6
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 1.3e-19 100.1 177 32.8
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 1.3e-19 100.1 176 36.9
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 1.1e-18 97.1 176 40.9
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 5.0e-16 88.2 178 34.3
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 1.1e-13 80.5 44 84.1
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 3.1e-13 79.0 72 58.3
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 6.4e-11 71.2 44 79.5
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.4e-10 70.1 44 75.0
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 4.1e-10 68.6 44 63.6
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 4.6e-09 65.1 43 69.8
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 1.0e-08 63.9 87 46.0


User provided reference genes

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