Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g006960.3 Solanum lycopersicum HOM05D007453 ORTHO05D009223 8.9e-125 450.3 228 100.0
Sopen05g002920 Solanum pennellii HOM05D007453 ORTHO05D009223 1.3e-112 409.8 206 100.0
PGSC0003DMG400017639 Solanum tuberosum HOM05D007453 ORTHO05D009223 6.9e-109 397.5 206 96.6
Nitab4.5_0000679g0070 Nicotiana tabacum HOM05D007453 ORTHO05D009223 8.7e-88 327.4 227 76.2
Nitab4.5_0002969g0020 Nicotiana tabacum HOM05D007453 ORTHO05D009223 1.0e-75 287.3 226 68.6
Peaxi162Scf00209g00516 Petunia axillaris HOM05D007453 ORTHO05D009223 6.7e-64 248.1 212 65.6
MSTRG.13399 Avicennia marina HOM05D007453 ORTHO05D009223 6.3e-62 241.5 222 61.3
Cc11_g13560 Coffea canephora HOM05D007453 ORTHO05D009223 1.1e-58 230.7 221 58.4
SalBow8G2121 Salvia bowleyana HOM05D007453 ORTHO05D009223 1.8e-56 223.4 216 57.9
Dinv24949 Davidia involucrata HOM05D007453 ORTHO05D009223 7.4e-55 218.0 206 56.8
MSTRG.2362 Avicennia marina HOM05D007453 ORTHO05D009223 2.2e-54 216.5 218 57.8
Migut.E00119 Erythranthe guttata HOM05D007453 ORTHO05D009223 3.7e-54 215.7 221 56.1
SGA_v2.0_scaffold87G26973 Striga asiatica HOM05D007453 ORTHO05D009223 1.8e-53 213.4 213 55.9
ECA246G4987 Erigeron canadensis HOM05D007453 ORTHO05D009223 4.2e-50 202.2 215 54.9
HanXRQChr17g0544601 Helianthus annuus HOM05D007453 ORTHO05D009223 1.2e-49 200.7 211 53.6
Gohir.D05G323400 Gossypium hirsutum HOM05D007453 ORTHO05D009223 2.3e-48 196.4 239 47.7
Actinidia08212 Actinidia chinensis HOM05D007453 ORTHO05D009223 1.5e-47 193.7 209 52.2
QL03p065949 Quercus lobata HOM05D007453 ORTHO05D009223 2.0e-47 193.4 210 52.9
arahy.Tifrunner.gnm1.ann1.QA8CWD Arachis hypogaea HOM05D007453 ORTHO05D009223 2.6e-47 193.0 208 54.3
unitig_62.g23683 Utricularia gibba HOM05D007453 ORTHO05D009223 5.7e-47 191.8 209 54.1
vmacro16323 Vaccinium macrocarpon HOM05D007453 ORTHO05D009223 2.2e-46 189.9 210 54.8
arahy.Tifrunner.gnm1.ann1.D3ZUUX Arachis hypogaea HOM05D007453 ORTHO05D009223 1.1e-45 187.6 208 52.9
CSS0012607 Camellia sinensis var. sinensis HOM05D007453 ORTHO05D009223 2.4e-45 186.4 210 51.9
Lalb_Chr10g0097941 Lupinus albus HOM05D007453 ORTHO05D009223 2.4e-45 186.4 206 49.5
Lsat_1_v5_gn_3_49860 Lactuca sativa HOM05D007453 ORTHO05D009223 9.1e-45 184.5 177 57.1
CsaV3_5G032280 Cucumis sativus L. HOM05D007453 ORTHO05D009223 1.2e-44 184.1 211 51.7
Actinidia19855 Actinidia chinensis HOM05D007453 ORTHO05D009223 1.6e-44 183.7 207 51.2
Duzib248G0401 Durio zibethinus HOM05D007453 ORTHO05D009223 1.6e-44 183.7 209 52.2
DCAR_031058 Daucus carota HOM05D007453 ORTHO05D009223 4.5e-44 182.2 208 51.9
FAN07G0059 Fragaria x ananassa HOM05D007453 ORTHO05D009223 5.9e-44 181.8 212 50.9
Gorai.009G347100 Gossypium raimondii HOM05D007453 ORTHO05D009223 5.9e-44 181.8 207 49.8
TWI75G0120 Tripterygium wilfordii HOM05D007453 ORTHO05D009223 7.7e-44 181.4 206 50.5
TPR.G29466 Trifolium pratense HOM05D007453 ORTHO05D009223 1.0e-43 181.0 207 51.2
FvH4_4g32080 Fragaria vesca HOM05D007453 ORTHO05D009223 1.3e-43 180.6 213 50.2
VMungo1215G3437 Vigna mungo HOM05D007453 ORTHO05D009223 1.3e-43 180.6 206 51.0
Cfa009043 Carpinus fangiana HOM05D007453 ORTHO05D009223 2.2e-43 179.9 208 51.0
FAN22G0202 Fragaria x ananassa HOM05D007453 ORTHO05D009223 3.8e-43 179.1 212 50.5
Phvul.002G067300 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 6.5e-43 178.3 207 51.7
Ca_07373_v3 Cicer arietinum L. HOM05D007453 ORTHO05D009223 1.9e-42 176.8 207 49.3
COL.COLO4_36183 Corchorus olitorius HOM05D007453 ORTHO05D009223 4.2e-42 175.6 209 49.8
Lj2g0026857 Lotus japonicus HOM05D007453 ORTHO05D009223 5.5e-42 175.3 207 49.3
Ciclev10032837m.g Citrus clementina HOM05D007453 ORTHO05D009223 7.2e-42 174.9 207 50.2
Thecc.02G232500 Theobroma cacao HOM05D007453 ORTHO05D009223 7.2e-42 174.9 209 49.8
CiPaw.05G140500 Carya illinoinensis HOM05D007453 ORTHO05D009223 1.2e-41 174.1 208 50.0
TAR481G0010 Trochodendron aralioides HOM05D007453 ORTHO05D009223 3.6e-41 172.6 208 49.0
Manes.05G095900 Manihot esculenta HOM05D007453 ORTHO05D009223 6.1e-41 171.8 206 48.1
Prupe.1G267100 Prunus persica HOM05D007453 ORTHO05D009223 1.4e-40 170.6 212 47.6
Psat2g125360 Pisum sativum HOM05D007453 ORTHO05D009223 2.3e-40 169.9 206 49.5
Medtr5g038225 Medicago truncatula HOM05D007453 ORTHO05D009223 4.0e-40 169.1 207 49.8
Cpa.g.sc1379.2 Carica papaya HOM05D007453 ORTHO05D009223 6.8e-40 168.3 216 45.8
Duzib251G0796 Durio zibethinus HOM05D007453 ORTHO05D009223 6.8e-40 168.3 209 49.8
RcHm_v2.0_Chr4g0440771 Rosa chinensis HOM05D007453 ORTHO05D009223 8.8e-40 167.9 214 47.7
Atru.chr11.1862 Acer truncatum HOM05D007453 ORTHO05D009223 1.2e-39 167.5 200 48.0
MELO3C012060.2 Cucumis melo HOM05D007453 ORTHO05D009223 1.5e-39 167.2 211 48.3
PGR119G1700 Punica granatum HOM05D007453 ORTHO05D009223 2.0e-39 166.8 213 48.4
MD13G1079700 Malus domestica HOM05D007453 ORTHO05D009223 2.6e-39 166.4 210 47.1
Hund05917 Selenicereus undatus HOM05D007453 ORTHO05D009223 3.4e-39 166.0 206 49.0
Haze_12073 Corylus avellana HOM05D007453 ORTHO05D009223 5.7e-39 165.2 237 45.6
Sabra10G0030300 Salix brachista HOM05D007453 ORTHO05D009223 7.5e-39 164.9 210 48.6
Thhalv10008803m.g Eutrema salsugineum HOM05D007453 ORTHO05D009223 1.7e-38 163.7 207 45.9
Sp1g21730 Schrenkiella parvula HOM05D007453 ORTHO05D009223 2.2e-38 163.3 212 44.8
Duzib248G0483 Durio zibethinus HOM05D007453 ORTHO05D009223 4.9e-38 162.2 209 48.3
Glyma.01G041651 Glycine max HOM05D007453 ORTHO05D009223 6.3e-38 161.8 238 44.5
Phvul.002G077900 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 1.1e-37 161.0 174 51.7
CARHR024860 Cardamine hirsuta HOM05D007453 ORTHO05D009223 1.8e-37 160.2 206 41.3
Gohir.A05G321200 Gossypium hirsutum HOM05D007453 ORTHO05D009223 1.8e-37 160.2 156 54.5
Rhsim12G0129600 Rhododendron simsii HOM05D007453 ORTHO05D009223 3.1e-37 159.5 261 44.8
Potri.010G034500 Populus trichocarpa HOM05D007453 ORTHO05D009223 7.0e-37 158.3 211 45.0
C07p19880 Brassica napus HOM05D007453 ORTHO05D009223 1.2e-36 157.5 213 43.2
BolC7t42507H Brassica oleracea HOM05D007453 ORTHO05D009223 1.2e-36 157.5 213 43.2
BcaB03g14102 Brassica carinata HOM05D007453 ORTHO05D009223 1.6e-36 157.1 211 43.6
AT1G27050 Arabidopsis thaliana HOM05D007453 ORTHO05D009223 4.5e-36 155.6 207 42.0
BcaC06g35095 Brassica carinata HOM05D007453 ORTHO05D009223 7.7e-36 154.8 213 42.3
Sc11g0001650 Simmondsia chinensis HOM05D007453 ORTHO05D009223 7.7e-36 154.8 206 48.1
GSVIVG01020080001 Vitis vinifera HOM05D007453 ORTHO05D009223 1.0e-35 154.5 206 48.5
Glyma.02G022351 Glycine max HOM05D007453 ORTHO05D009223 1.7e-35 153.7 155 53.5
Aa31LG7G8100 Aethionema arabicum HOM05D007453 ORTHO05D009223 5.0e-35 152.1 216 42.6
EL10Ac6g13141 Beta vulgaris HOM05D007453 ORTHO05D009223 8.6e-35 151.4 213 44.6
AL1G38440 Arabidopsis lyrata HOM05D007453 ORTHO05D009223 1.1e-34 151.0 208 42.3
Eucgr.B03407 Eucalyptus grandis HOM05D007453 ORTHO05D009223 1.9e-34 150.2 212 45.3
Carub.0001s2392 Capsella rubella HOM05D007453 ORTHO05D009223 1.2e-33 147.5 208 43.3
FAN12G0628 Fragaria x ananassa HOM05D007453 ORTHO05D009223 3.6e-33 146.0 213 44.1
ClCG05G024650 Citrullus lanatus HOM05D007453 ORTHO05D009223 1.4e-32 144.1 208 43.8
THA.LOC104822931 Tarenaya hassleriana HOM05D007453 ORTHO05D009223 5.2e-32 142.1 213 43.2
Sed0013591 Sechium edule HOM05D007453 ORTHO05D009223 8.9e-32 141.4 219 42.0
CiPaw.06G080300 Carya illinoinensis HOM05D007453 ORTHO05D009223 1.3e-30 137.5 161 50.3
BraA07t29098Z Brassica rapa HOM05D007453 ORTHO05D009223 1.7e-30 137.1 211 41.2
A07p13280 Brassica napus HOM05D007453 ORTHO05D009223 3.7e-30 136.0 211 40.8
MBI01_g12858_MAGBIO Magnolia biondii HOM05D007453 ORTHO05D009223 9.2e-29 131.3 204 40.7
PSO591G0176 Papaver somniferum HOM05D007453 ORTHO05D009223 1.6e-28 130.6 214 36.0
PSO832G2667 Papaver somniferum HOM05D007453 ORTHO05D009223 3.5e-28 129.4 217 36.9
Aqoxy3G03257 Aquilegia oxysepala HOM05D007453 ORTHO05D009223 1.7e-27 127.1 157 45.9
Lj6C173T12 Lonicera japonica HOM05D007453 ORTHO05D009223 2.3e-27 126.7 115 59.1
Dinv40682 Davidia involucrata HOM05D007453 ORTHO05D009223 1.9e-26 123.6 134 50.7
ATR0665G072 Amborella trichopoda HOM05D007453 ORTHO05D009223 7.5e-23 111.7 208 38.9
AUR62026455 Chenopodium quinoa HOM05D007453 ORTHO05D009223 2.4e-21 106.7 122 47.5
AUR62026264 Chenopodium quinoa HOM05D007453 ORTHO05D009223 1.0e-19 101.3 115 48.7
HPP92_001648 Vanilla planifolia HOM05D007453 ORTHO05D009223 6.6e-19 98.6 191 36.6
CDE05G3569 Ceratophyllum demersum HOM05D007453 ORTHO05D009223 1.1e-18 97.8 210 31.9
A07p13630 Brassica napus HOM05D007453 ORTHO05D009223 4.1e-13 79.3 132 37.1
Lj6C173T11 Lonicera japonica HOM05D007453 ORTHO05D009223 3.0e-11 73.2 88 45.5
Nn4g23028 Nelumbo nucifera HOM05D007453 ORTHO05D009223 1.1e-10 71.2 92 45.7
HPP92_001630 Vanilla planifolia HOM05D007453 ORTHO05D009223 6.2e-09 65.5 94 39.4


User provided reference genes

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